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Bra004109 protein (Brassica rapa) - STRING interaction network
"Bra004109" - AT1G65060 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra004109AT1G65060 (E=1e-253) 4CL3 | 4CL3; 4-coumarate-CoA ligase (556 aa)    
Predicted Functional Partners:
Bra038340
AT1G68890 (E=0.0) | 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding (1710 aa)
   
  0.982
Bra036771
AT1G36160 (E=0.0) ACC1, AT-ACC1, EMB22, GK, PAS3 | ACC1 (ACETYL-COENZYME A CARBOXYLASE 1); acetyl-CoA carboxylase (2233 aa)
   
 
  0.967
Bra018702
AT1G36180 (E=0.0) ACC2 | ACC2 (ACETYL-COA CARBOXYLASE 2); acetyl-CoA carboxylase (2310 aa)
   
 
  0.967
Bra018311
AT2G30490 (E=3e-256) ATC4H, C4H, CYP73A5 | C4H (CINNAMATE-4-HYDROXYLASE); trans-cinnamate 4-monooxygenase (505 aa)
   
 
  0.944
Bra008792
AT5G13930 (E=4e-219) CHS, TT4, ATCHS | TT4 (TRANSPARENT TESTA 4); naringenin-chalcone synthase (395 aa)
   
 
  0.943
Bra006224
AT5G13930 (E=2e-216) CHS, TT4, ATCHS | TT4 (TRANSPARENT TESTA 4); naringenin-chalcone synthase (396 aa)
   
 
  0.943
Bra017752
AT4G36220 (E=8e-256) FAH1, CYP84A1 | FAH1 (FERULIC ACID 5-HYDROXYLASE 1); ferulate 5-hydroxylase/ monooxygenase (519 aa)
   
 
  0.938
Bra017210
AT2G37040 (E=0.0) pal1, ATPAL1 | pal1 (Phe ammonia lyase 1); phenylalanine ammonia-lyase (722 aa)
       
  0.936
Bra003126
AT3G53260 (E=0.0) PAL2, ATPAL2 | PAL2; phenylalanine ammonia-lyase (707 aa)
       
  0.934
Bra040296
AT3G06860 (E=0.0) MFP2, ATMFP2 | MFP2 (MULTIFUNCTIONAL PROTEIN 2); 3-hydroxyacyl-CoA dehydrogenase/ enoyl-CoA hydratase (725 aa)
   
  0.913
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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