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Bra004114 protein (Brassica rapa) - STRING interaction network
"Bra004114" - AT1G65440 in Brassica rapa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra004114AT1G65440 (E=0.0) GTB1 | GTB1; RNA binding / hydrolase, acting on ester bonds / transcription elongation regulator (1594 aa)    
Predicted Functional Partners:
Bra037858
AT4G08350 (E=6e-030) GTA02, GTA2 | GTA2 (GLOBAL TRANSCRIPTION FACTOR GROUP A2); structural constituent of ribosome / transcription elongation regulator/ transcription factor (83 aa)
     
 
  0.975
Bra037857
AT4G08350 (E=3e-062) GTA02, GTA2 | GTA2 (GLOBAL TRANSCRIPTION FACTOR GROUP A2); structural constituent of ribosome / transcription elongation regulator/ transcription factor (251 aa)
     
 
  0.975
Bra022968
AT4G08350 (E=0.0) GTA02, GTA2 | GTA2 (GLOBAL TRANSCRIPTION FACTOR GROUP A2); structural constituent of ribosome / transcription elongation regulator/ transcription factor (1020 aa)
     
 
  0.975
Bra009470
AT5G04290 (E=0.0) KTF1 | KTF1 (KOW DOMAIN-CONTAINING TRANSCRIPTION FACTOR 1); nucleotide binding (1543 aa)
     
 
  0.975
Bra000641
AT2G34210 (E=0.0) | structural constituent of ribosome / transcription elongation regulator/ transcription initiation factor (1041 aa)
     
 
  0.975
Bra005440
AT4G19000 (E=2e-080) | IWS1 C-terminus family protein (390 aa)
     
 
  0.969
Bra023242
AT1G32130 (E=7e-212) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- 25 plant structures; EXPRESSED DURING- 15 growth stages; CONTAINS InterPro DOMAIN/s- TFIIS N-terminal (InterPro-IPR017923), IWS1, C-terminal (InterPro-IPR008654); BEST Arabidopsis thaliana protein match is- IWS1 C-terminus family protein (TAIR-AT4G19000.1); Has 907 Blast hits to 871 proteins in 182 species- Archae - 4; Bacteria - 14; Metazoa - 417; Fungi - 195; Plants - 42; Viruses - 8; Other Eukaryotes - 227 (source- NCBI BLink). (497 aa)
     
 
  0.967
Bra029206
AT5G63670 (E=4e-065) SPT42 | SPT42 (SPT4 HOMOLOG 2); positive transcription elongation factor/ zinc ion binding ; May regulate transcription elongation by RNA polymerase II. May enhance transcriptional pausing at sites proximal to the promoter, which may in turn facilitate the assembly of an elongation competent RNA polymerase II complex (116 aa)
       
 
  0.949
Bra006007
AT5G08565 (E=4e-059) | positive transcription elongation factor/ zinc ion binding ; May regulate transcription elongation by RNA polymerase II. May enhance transcriptional pausing at sites proximal to the promoter, which may in turn facilitate the assembly of an elongation competent RNA polymerase II complex (116 aa)
       
 
  0.949
Bra033055
AT3G28730 (E=9e-172) ATHMG, SSRP1, NFD | ATHMG (ARABIDOPSIS THALIANA HIGH MOBILITY GROUP); transcription factor (623 aa)
     
 
  0.873
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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