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Bra004115 protein (Brassica rapa) - STRING interaction network
"Bra004115" - AT1G65445 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra004115AT1G65445 (E=2e-070) | transferase-related (305 aa)    
Predicted Functional Partners:
Bra034392
AT2G28160 (E=2e-134) FIT1, ATBHLH029, FRU, BHLH029, ATBHLH29 | FRU (FER-LIKE REGULATOR OF IRON UPTAKE); DNA binding / transcription factor (316 aa)
           
  0.491
Bra011972
AT2G28160 (E=1e-145) FIT1, ATBHLH029, FRU, BHLH029, ATBHLH29 | FRU (FER-LIKE REGULATOR OF IRON UPTAKE); DNA binding / transcription factor (316 aa)
           
  0.491
Bra000495
AT2G28160 (E=2e-129) FIT1, ATBHLH029, FRU, BHLH029, ATBHLH29 | FRU (FER-LIKE REGULATOR OF IRON UPTAKE); DNA binding / transcription factor (308 aa)
           
  0.491
Bra033442
AT3G52300 (E=1e-089) ATPQ | ATPQ (ATP SYNTHASE D CHAIN, MITOCHONDRIAL); hydrogen ion transmembrane transporter (168 aa)
           
  0.472
Bra012809
AT3G52300 (E=5e-081) ATPQ | ATPQ (ATP SYNTHASE D CHAIN, MITOCHONDRIAL); hydrogen ion transmembrane transporter (168 aa)
           
  0.472
Bra006918
AT3G52300 (E=2e-080) ATPQ | ATPQ (ATP SYNTHASE D CHAIN, MITOCHONDRIAL); hydrogen ion transmembrane transporter (168 aa)
           
  0.472
Bra007142
AT3G55120 (E=2e-107) TT5, A11, CFI | TT5 (TRANSPARENT TESTA 5); chalcone isomerase (251 aa)
           
  0.426
Bra003209
AT3G55120 (E=2e-090) TT5, A11, CFI | TT5 (TRANSPARENT TESTA 5); chalcone isomerase (227 aa)
           
  0.426
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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