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Bra004117 protein (Brassica rapa) - STRING interaction network
"Bra004117" - AT4G20370 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra004117AT4G20370 (E=2e-085) TSF | TSF (TWIN SISTER OF FT); phosphatidylethanolamine binding (175 aa)    
Predicted Functional Partners:
Bra031109
AT2G20060 (E=1e-135) | ribosomal protein L4 family protein (514 aa)
     
    0.962
Bra029156
AT1G07320 (E=6e-021) RPL4 | RPL4; poly(U) binding / structural constituent of ribosome (112 aa)
     
    0.962
Bra015574
AT1G07320 (E=3e-118) RPL4 | RPL4; poly(U) binding / structural constituent of ribosome (283 aa)
     
    0.962
Bra031595
AT1G07830 (E=1e-061) | ribosomal protein L29 family protein (146 aa)
     
    0.961
Bra018681
AT1G07830 (E=5e-065) | ribosomal protein L29 family protein (144 aa)
     
    0.961
Bra037787
AT5G64650 (E=2e-068) | ribosomal protein L17 family protein (160 aa)
     
    0.960
Bra014830
AT3G54210 (E=4e-015) | ribosomal protein L17 family protein (113 aa)
     
    0.960
Bra007055
AT3G54210 (E=1e-078) | ribosomal protein L17 family protein (208 aa)
     
    0.960
Bra006032
AT5G09770 (E=1e-077) | ribosomal protein L17 family protein (159 aa)
     
    0.960
Bra003176
AT3G54210 (E=2e-093) | ribosomal protein L17 family protein (208 aa)
     
    0.960
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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