STRINGSTRING
Bra004118 protein (Brassica rapa) - STRING interaction network
"Bra004118" - AT1G65540 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra004118AT1G65540 (E=0.0) | calcium-binding EF hand family protein (749 aa)    
Predicted Functional Partners:
Bra037777
AT5G64400 (E=5e-047) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; EXPRESSED IN- 25 plant structures; EXPRESSED DURING- 15 growth stages; CONTAINS InterPro DOMAIN/s- CHCH (InterPro-IPR010625); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT5G09570.1); Has 218 Blast hits to 216 proteins in 80 species- Archae - 0; Bacteria - 10; Metazoa - 66; Fungi - 60; Plants - 47; Viruses - 0; Other Eukaryotes - 35 (source- NCBI BLink). (144 aa)
           
  0.540
Bra036102
AT5G27290 (E=5e-167) | unknown protein (341 aa)
           
  0.540
Bra033866
AT1G31920 (E=1e-263) | pentatricopeptide (PPR) repeat-containing protein (525 aa)
           
  0.540
Bra013772
AT4G24175 (E=3e-086) | unknown protein (307 aa)
           
  0.540
Bra024293
AT5G64400 (E=5e-034) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; EXPRESSED IN- 25 plant structures; EXPRESSED DURING- 15 growth stages; CONTAINS InterPro DOMAIN/s- CHCH (InterPro-IPR010625); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT5G09570.1); Has 218 Blast hits to 216 proteins in 80 species- Archae - 0; Bacteria - 10; Metazoa - 66; Fungi - 60; Plants - 47; Viruses - 0; Other Eukaryotes - 35 (source- NCBI BLink). (146 aa)
           
  0.456
Bra036845
AT3G50950 (E=0.0) | disease resistance protein (CC-NBS-LRR class), putative (1291 aa)
     
 
  0.437
Bra030522
AT1G03160 (E=0.0) FZL | FZL (FZO-LIKE); GTP binding / GTPase/ thiamin-phosphate diphosphorylase (909 aa)
     
   
  0.430
Bra004645
AT2G41730 (E=1e-039) | unknown protein (130 aa)
           
  0.412
Bra004644
AT2G41730 (E=8e-034) | unknown protein (128 aa)
           
  0.412
Bra039086
AT3G27280 (E=9e-132) ATPHB4 | ATPHB4 (PROHIBITIN 4) (278 aa)
     
   
  0.407
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
Server load: low (8%) [HD]