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Bra004119 protein (Brassica rapa) - STRING interaction network
"Bra004119" - AT1G65570 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra004119AT1G65570 (E=4e-194) | polygalacturonase, putative / pectinase, putative (397 aa)    
Predicted Functional Partners:
Bra031204
AT2G21610 (E=9e-161) PE11, ATPE11 | pectinesterase family protein (323 aa)
   
 
  0.737
Bra018152
AT3G47400 (E=1e-298) | pectinesterase family protein (594 aa)
   
 
  0.731
Bra022440
AT3G19620 (E=1e-244) | glycosyl hydrolase family 3 protein (771 aa)
         
  0.724
Bra039419
AT3G05620 (E=3e-267) | pectinesterase family protein (539 aa)
       
  0.721
Bra035579
AT5G55590 (E=2e-150) QRT1 | QRT1 (QUARTET 1); pectinesterase (378 aa)
       
  0.721
Bra033083
AT3G29090 (E=1e-184) PME31, ATPME31 | pectinesterase family protein (317 aa)
       
  0.721
Bra025376
AT3G29090 (E=2e-186) PME31, ATPME31 | pectinesterase family protein (317 aa)
       
  0.721
Bra002891
AT5G55590 (E=1e-097) QRT1 | QRT1 (QUARTET 1); pectinesterase (409 aa)
       
  0.721
Bra002257
AT5G19730 (E=2e-204) | pectinesterase family protein (382 aa)
       
  0.721
Bra031771
AT1G11580 (E=2e-238) ATPMEPCRA, PMEPCRA | PMEPCRA (METHYLESTERASE PCR A); enzyme inhibitor/ pectinesterase ; Acts in the modification of cell walls via demethylesterification of cell wall pectin (452 aa)
       
  0.716
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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