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Bra004121 protein (Brassica rapa) - STRING interaction network
"Bra004121" - AT1G65590 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra004121AT1G65590 (E=6e-265) HEXO3, ATHEX1 | HEXO3 (BETA-HEXOSAMINIDASE 3); beta-N-acetylhexosaminidase/ hexosaminidase (534 aa)    
Predicted Functional Partners:
Bra020951
AT4G19810 (E=2e-185) | glycosyl hydrolase family 18 protein (380 aa)
   
   
  0.954
Bra026469
AT5G24090 (E=2e-151) | acidic endochitinase (CHIB1) (301 aa)
         
  0.932
Bra028661
AT5G08370 (E=2e-209) AtAGAL2 | AtAGAL2 (Arabidopsis thaliana ALPHA-GALACTOSIDASE 2); alpha-galactosidase/ catalytic/ hydrolase, hydrolyzing O-glycosyl compounds (394 aa)
   
 
  0.918
Bra007235
AT3G56310 (E=1e-236) | alpha-galactosidase, putative / melibiase, putative / alpha-D-galactoside galactohydrolase, putative (429 aa)
   
 
  0.918
Bra028660
AT5G08380 (E=4e-211) AtAGAL1 | AtAGAL1 (Arabidopsis thaliana ALPHA-GALACTOSIDASE 1); alpha-galactosidase/ catalytic/ hydrolase, hydrolyzing O-glycosyl compounds (416 aa)
   
 
  0.918
Bra038726
AT3G12500 (E=8e-144) ATHCHIB, PR3, PR-3, CHI-B, B-CHI | ATHCHIB (ARABIDOPSIS THALIANA BASIC CHITINASE); chitinase (330 aa)
         
  0.903
Bra034754
AT3G12500 (E=1e-172) ATHCHIB, PR3, PR-3, CHI-B, B-CHI | ATHCHIB (ARABIDOPSIS THALIANA BASIC CHITINASE); chitinase (323 aa)
         
  0.903
Bra007071
AT3G54420 (E=1e-148) ATEP3, ATCHITIV, CHIV | ATEP3; chitinase (273 aa)
         
  0.903
Bra003861
AT1G72990 (E=3e-262) BGAL17 | BGAL17 (beta-galactosidase 17); beta-galactosidase/ catalytic/ cation binding (682 aa)
       
  0.900
Bra032460
AT1G05590 (E=3e-287) HEXO2, ATHEX3 | HEXO2 (BETA-HEXOSAMINIDASE 2); beta-N-acetylhexosaminidase/ hexosaminidase/ hydrolase, hydrolyzing O-glycosyl compounds (582 aa)
   
   
0.827
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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