STRINGSTRING
Bra004122 protein (Brassica rapa) - STRING interaction network
"Bra004122" - AT5G36950 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra004122AT5G36950 (E=2e-119) DegP10 | DegP10 (DegP protease 10); catalytic/ protein binding / serine-type endopeptidase/ serine-type peptidase (483 aa)    
Predicted Functional Partners:
Bra011528
AT3G52380 (E=1e-017) CP33, PDE322 | CP33; RNA binding (157 aa)
       
  0.870
Bra015799
AT1G75990 (E=3e-224) | 26S proteasome regulatory subunit S3, putative (RPN3) (482 aa)
     
    0.837
Bra012219
AT1G76010 (E=1e-035) | nucleic acid binding (214 aa)
     
    0.837
Bra008427
AT1G79620 (E=2e-194) | leucine-rich repeat transmembrane protein kinase, putative (1465 aa)
     
  0.770
Bra000209
AT2G40860 (E=0.0) | protein kinase family protein / protein phosphatase 2C ( PP2C) family protein (655 aa)
     
  0.770
Bra012038
AT2G26990 (E=3e-221) FUS12, ATCSN2, COP12, CSN2 | FUS12 (FUSCA 12) (854 aa)
     
    0.741
Bra040569
AT1G53750 (E=3e-238) RPT1A | RPT1A (REGULATORY PARTICLE TRIPLE-A 1A); ATPase (433 aa)
       
  0.738
Bra040214
AT3G05530 (E=1e-229) RPT5A, ATS6A.2 | RPT5A (REGULATORY PARTICLE TRIPLE-A ATPASE 5A); ATPase/ calmodulin binding (424 aa)
       
  0.738
Bra039688
AT1G53750 (E=5e-247) RPT1A | RPT1A (REGULATORY PARTICLE TRIPLE-A 1A); ATPase (426 aa)
       
  0.738
Bra039431
AT3G05530 (E=3e-230) RPT5A, ATS6A.2 | RPT5A (REGULATORY PARTICLE TRIPLE-A ATPASE 5A); ATPase/ calmodulin binding (424 aa)
       
  0.738
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
Server load: low (14%) [HD]