STRINGSTRING
Bra004124 protein (Brassica rapa) - STRING interaction network
"Bra004124" - AT1G65700 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra004124AT1G65700 (E=7e-049) | small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative (98 aa)    
Predicted Functional Partners:
Bra030529
AT1G03330 (E=2e-047) | small nuclear ribonucleoprotein D, putative / snRNP core SM-like protein, putative / U6 snRNA-associated Sm-like protein, putative (93 aa)
     
  0.998
Bra036157
AT5G48870 (E=9e-041) SAD1 | SAD1 (SUPERSENSITIVE TO ABA AND DROUGHT 1); RNA binding (89 aa)
     
  0.998
Bra020674
AT5G48870 (E=4e-041) SAD1 | SAD1 (SUPERSENSITIVE TO ABA AND DROUGHT 1); RNA binding (89 aa)
     
  0.998
Bra025138
AT2G03870 (E=4e-045) | small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative (247 aa)
     
  0.998
Bra003512
AT2G47610 (E=2e-108) | 60S ribosomal protein L7A (RPL7aA) (405 aa)
     
  0.996
Bra009946
AT5G27720 (E=9e-051) emb1644 | emb1644 (embryo defective 1644) (129 aa)
     
  0.996
Bra009946.1-P
AT5G27720 (E=9e-051) emb1644 | emb1644 (embryo defective 1644) (129 aa)
     
  0.996
Bra014525
AT3G59810 (E=6e-042) | small nuclear ribonucleoprotein F, putative / U6 snRNA-associated Sm-like protein, putative / Sm protein F, putative (92 aa)
     
  0.996
Bra007478
AT3G59810 (E=3e-042) | small nuclear ribonucleoprotein F, putative / U6 snRNA-associated Sm-like protein, putative / Sm protein F, putative (93 aa)
     
  0.996
Bra003391
AT2G43810 (E=2e-042) | small nuclear ribonucleoprotein F, putative / U6 snRNA-associated Sm-like protein, putative / Sm protein F, putative (91 aa)
     
  0.996
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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