STRINGSTRING
ARF8-1 protein (Brassica rapa) - STRING interaction network
"ARF8-1" - AT5G37020 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ARF8-1AT5G37020 (E=0.0) ARF8, ATARF8 | ARF8 (AUXIN RESPONSE FACTOR 8); transcription factor ; Auxin response factors (ARFs) are transcriptional factors that binds specifically to the DNA sequence 5’-TGTCTC-3’ found in the auxin-responsive promoter elements (AuxREs) (780 aa)    
Predicted Functional Partners:
Bra030560
AT1G04250 (E=4e-119) AXR3, IAA17 | AXR3 (AUXIN RESISTANT 3); transcription factor ; Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations (229 aa)
       
 
  0.916
Bra015326
AT1G04550 (E=1e-084) IAA12, BDL | IAA12 (AUXIN-INDUCED PROTEIN 12); transcription factor/ transcription repressor ; Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations (235 aa)
       
 
  0.916
Bra011045
AT4G28640 (E=2e-093) IAA11 | IAA11 (INDOLE-3-ACETIC ACID INDUCIBLE 11); transcription factor ; Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations (243 aa)
       
 
  0.916
Bra027504
AT5G43700 (E=6e-090) ATAUX2-11, IAA4 | ATAUX2-11 (AUXIN INDUCIBLE 2-11); DNA binding / transcription factor ; Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations (191 aa)
       
 
  0.915
Bra026755
AT1G15580 (E=4e-071) IAA5, ATAUX2-27, AUX2-27 | IAA5 (INDOLE-3-ACETIC ACID INDUCIBLE 5); transcription factor ; Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations (156 aa)
       
 
  0.915
Bra021117
AT3G15540 (E=7e-100) IAA19, MSG2 | IAA19 (INDOLE-3-ACETIC ACID INDUCIBLE 19); transcription factor ; Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations (197 aa)
       
 
  0.914
Bra001598
AT3G15540 (E=1e-102) IAA19, MSG2 | IAA19 (INDOLE-3-ACETIC ACID INDUCIBLE 19); transcription factor ; Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations (194 aa)
       
 
  0.914
Bra002479
AT5G60450 (E=0.0) ARF4 | ARF4 (AUXIN RESPONSE FACTOR 4); transcription factor ; Auxin response factors (ARFs) are transcriptional factors that binds specifically to the DNA sequence 5’-TGTCTC-3’ found in the auxin-responsive promoter elements (AuxREs) (758 aa)
       
 
0.913
Bra018993
AT1G52830 (E=7e-076) IAA6, SHY1 | IAA6 (INDOLE-3-ACETIC ACID 6); transcription factor ; Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations (203 aa)
       
 
  0.913
Bra015289
AT1G04100 (E=2e-064) IAA10 | IAA10; transcription factor ; Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations (271 aa)
       
 
  0.913
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
Server load: low (7%) [HD]