STRINGSTRING
Bra004126 protein (Brassica rapa) - STRING interaction network
"Bra004126" - AT1G65720 in Brassica rapa
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
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Textmining
[Homology]
Score
Bra004126AT1G65720 (E=5e-051) | unknown protein (183 aa)    
Predicted Functional Partners:
Bra035837
AT5G63550 (E=3e-122) | EXPRESSED IN- guard cell; CONTAINS InterPro DOMAIN/s- DEK, C-terminal (InterPro-IPR014876); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT3G48710.1). (549 aa)
           
  0.541
Bra035582
AT4G26630 (E=4e-086) | EXPRESSED IN- 23 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- DEK, C-terminal (InterPro-IPR014876); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT5G55660.1); Has 253164 Blast hits to 95130 proteins in 2571 species- Archae - 852; Bacteria - 27744; Metazoa - 108483; Fungi - 29060; Plants - 10256; Viruses - 1718; Other Eukaryotes - 75051 (source- NCBI BLink). (794 aa)
           
  0.541
Bra038644
AT5G63550 (E=5e-108) | EXPRESSED IN- guard cell; CONTAINS InterPro DOMAIN/s- DEK, C-terminal (InterPro-IPR014876); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT3G48710.1). (490 aa)
           
  0.465
Bra029213
AT5G63550 (E=1e-069) | EXPRESSED IN- guard cell, cultured cell; CONTAINS InterPro DOMAIN/s- DEK, C-terminal (InterPro-IPR014876); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT3G48710.1); Has 115795 Blast hits to 50006 proteins in 1760 species- Archae - 230; Bacteria - 10317; Metazoa - 57515; Fungi - 12631; Plants - 4292; Viruses - 1075; Other Eukaryotes - 29735 (source- NCBI BLink). (282 aa)
           
  0.465
Bra027748
AT4G26630 (E=2e-014) | EXPRESSED IN- 23 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- DEK, C-terminal (InterPro-IPR014876); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT5G55660.1); Has 253164 Blast hits to 95130 proteins in 2571 species- Archae - 852; Bacteria - 27744; Metazoa - 108483; Fungi - 29060; Plants - 10256; Viruses - 1718; Other Eukaryotes - 75051 (source- NCBI BLink). (176 aa)
           
  0.465
Bra026415
AT4G26630 (E=3e-130) | EXPRESSED IN- 23 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- DEK, C-terminal (InterPro-IPR014876); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT5G55660.1); Has 253164 Blast hits to 95130 proteins in 2571 species- Archae - 852; Bacteria - 27744; Metazoa - 108483; Fungi - 29060; Plants - 10256; Viruses - 1718; Other Eukaryotes - 75051 (source- NCBI BLink). (835 aa)
           
  0.465
Bra019559
AT3G48710 (E=6e-059) | EXPRESSED IN- 22 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- DEK, C-terminal (InterPro-IPR014876); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT5G63550.2); Has 48226 Blast hits to 25734 proteins in 1103 species- Archae - 54; Bacteria - 6881; Metazoa - 21026; Fungi - 4604; Plants - 1514; Viruses - 306; Other Eukaryotes - 13841 (source- NCBI BLink). (418 aa)
           
  0.465
Bra010432
AT5G56190 (E=1e-175) | WD-40 repeat family protein (1131 aa)
           
  0.465
Bra002880
AT5G55660 (E=4e-161) | LOCATED IN- mitochondrion; EXPRESSED IN- 24 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- DEK, C-terminal (InterPro-IPR014876); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT4G26630.2); Has 348612 Blast hits to 121147 proteins in 2910 species- Archae - 1231; Bacteria - 38190; Metazoa - 148268; Fungi - 42547; Plants - 15024; Viruses - 2447; Other Eukaryotes - 100905 (source- NCBI BLink). (865 aa)
           
  0.465
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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