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Bra004128 protein (Brassica rapa) - STRING interaction network
"Bra004128" - AT1G65780 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra004128AT1G65780 (E=2e-264) | tRNA-splicing endonuclease positive effector-related (1015 aa)    
Predicted Functional Partners:
Bra037150
AT5G66750 (E=0.0) DDM1, CHR01, CHR1, CHA1, SOM4, SOM1, ATDDM1 | CHR1 (CHROMATIN REMODELING 1); ATPase/ helicase (1199 aa)
   
  0.912
Bra040980
ATCG00780 (E=1e-038) RPL14 | encodes a chloroplast ribosomal protein L14, a constituent of the large subunit of the ribosomal complex (171 aa)
       
    0.875
Bra040091
AT3G26560 (E=5e-178) | ATP-dependent RNA helicase, putative (791 aa)
     
  0.842
Bra025211
AT3G26560 (E=0.0) | ATP-dependent RNA helicase, putative (1171 aa)
     
  0.842
Bra000126
AT2G39260 (E=0.0) | RNA binding / binding / protein binding (1175 aa)
     
  0.838
Bra021970
AT5G45400 (E=3e-275) | replication protein, putative (803 aa)
     
  0.750
Bra020039
AT5G19400 (E=2e-310) SMG7 | SMG7 (1036 aa)
       
  0.749
Bra002233
AT5G19400 (E=5e-290) SMG7 | SMG7 (1071 aa)
       
  0.749
Bra039537.1-P
AT2G35280 (E=2e-021) | F-box family protein (174 aa)
       
  0.744
Bra039535
AT2G35280 (E=2e-023) | F-box family protein (158 aa)
       
  0.744
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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