STRINGSTRING
Bra004135 protein (Brassica rapa) - STRING interaction network
"Bra004135" - AT1G65950 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra004135AT1G65950 (E=6e-259) | ABC1 family protein (554 aa)    
Predicted Functional Partners:
Bra020452
AT5G57300 (E=2e-036) | UbiE/COQ5 methyltransferase family protein (194 aa)
   
 
  0.752
Bra016349
AT1G23360 (E=4e-113) | UbiE/COQ5 methyltransferase family protein (264 aa)
   
 
  0.752
Bra008348
AT1G78140 (E=6e-157) | methyltransferase-related (341 aa)
   
 
  0.752
Bra006827
AT5G57300 (E=2e-145) | UbiE/COQ5 methyltransferase family protein (290 aa)
   
 
  0.752
Bra002740
AT5G57300 (E=4e-142) | UbiE/COQ5 methyltransferase family protein (289 aa)
   
 
  0.752
Bra021677
AT2G30920 (E=4e-072) ATCOQ3, EMB3002, COQ3 | ATCOQ3 (ARABDIOPSIS THALIANA COENZYME Q 3); hexaprenyldihydroxybenzoate methyltransferase/ polyprenyldihydroxybenzoate methyltransferase (328 aa)
     
  0.726
Bra019192
AT4G25080 (E=8e-069) CHLM | CHLM (magnesium-protoporphyrin IX methyltransferase); magnesium protoporphyrin IX methyltransferase (135 aa)
     
  0.726
Bra019190
AT4G25080 (E=3e-027) CHLM | CHLM (magnesium-protoporphyrin IX methyltransferase); magnesium protoporphyrin IX methyltransferase (93 aa)
     
  0.726
Bra029067
AT5G53460 (E=0.0) GLT1 | GLT1; glutamate synthase (NADH) (2199 aa)
   
   
  0.629
Bra025711
AT1G19140 (E=2e-140) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- ubiquinone biosynthetic process; LOCATED IN- mitochondrion; EXPRESSED IN- 24 plant structures; EXPRESSED DURING- 15 growth stages; CONTAINS InterPro DOMAIN/s- COQ9 (InterPro-IPR013718), Ubiquinone biosynthesis protein COQ9 (InterPro-IPR012762); Has 607 Blast hits to 607 proteins in 177 species- Archae - 0; Bacteria - 151; Metazoa - 114; Fungi - 62; Plants - 22; Viruses - 0; Other Eukaryotes - 258 (source- NCBI BLink). (301 aa)
     
 
  0.575
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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