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Bra004138 protein (Brassica rapa) - STRING interaction network
"Bra004138" - AT1G65980 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra004138AT1G65980 (E=7e-077) TPX1 | TPX1 (thioredoxin-dependent peroxidase 1); antioxidant/ oxidoreductase (162 aa)    
Predicted Functional Partners:
Bra004639
AT2G41680 (E=7e-262) NTRC | NTRC (NADPH-DEPENDENT THIOREDOXIN REDUCTASE C); thioredoxin-disulfide reductase (521 aa)
   
  0.925
Bra000234
AT2G41680 (E=3e-246) NTRC | NTRC (NADPH-DEPENDENT THIOREDOXIN REDUCTASE C); thioredoxin-disulfide reductase (511 aa)
   
  0.925
Bra038667
AT3G11630 (E=3e-043) | 2-cys peroxiredoxin, chloroplast (BAS1) (225 aa)
     
 
  0.916
Bra034824
AT3G11630 (E=7e-113) | 2-cys peroxiredoxin, chloroplast (BAS1) (261 aa)
     
 
  0.916
Bra009181
AT5G06290 (E=1e-118) 2-Cys Prx B | 2-Cys Prx B (2-Cysteine peroxiredoxin B); antioxidant/ peroxiredoxin (269 aa)
     
 
  0.916
Bra001415
AT3G11630 (E=8e-106) | 2-cys peroxiredoxin, chloroplast (BAS1) (307 aa)
     
 
  0.916
Bra003241
AT3G56460 (E=7e-163) | oxidoreductase, zinc-binding dehydrogenase family protein (467 aa)
     
  0.909
Bra022255
AT3G17880 (E=8e-153) HIP, ATTDX, ATHIP2 | ATTDX (TETRATICOPEPTIDE DOMAIN-CONTAINING THIOREDOXIN); oxidoreductase, acting on sulfur group of donors, disulfide as acceptor / protein binding (378 aa)
     
  0.906
Bra038116
AT1G53300 (E=7e-239) TTL1 | TTL1 (TETRATRICOPETIDE-REPEAT THIOREDOXIN-LIKE 1); binding (658 aa)
     
  0.904
Bra030946
AT1G53300 (E=2e-243) TTL1 | TTL1 (TETRATRICOPETIDE-REPEAT THIOREDOXIN-LIKE 1); binding (670 aa)
     
  0.904
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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