STRINGSTRING
Bra004140 protein (Brassica rapa) - STRING interaction network
"Bra004140" - AT2G03820 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra004140AT2G03820 (E=7e-262) | nonsense-mediated mRNA decay NMD3 family protein (517 aa)    
Predicted Functional Partners:
Bra006421
AT1G80770 (E=2e-181) PDE318 | PDE318 (pigment defective 318); GTP binding (459 aa)
     
 
  0.994
Bra039686
AT5G25030 (E=1e-051) | ATP binding / nucleotide binding / phenylalanine-tRNA ligase (225 aa)
     
 
  0.993
Bra039343
AT1G50920 (E=4e-019) | GTP-binding protein-related (241 aa)
     
 
  0.993
Bra038017
AT1G50920 (E=1e-030) | GTP-binding protein-related (172 aa)
     
 
  0.993
Bra035154
AT1G80770 (E=7e-224) PDE318 | PDE318 (pigment defective 318); GTP binding (455 aa)
     
 
  0.993
Bra034775
AT1G50920 (E=1e-059) | GTP-binding protein-related (447 aa)
     
 
  0.993
Bra030585
AT1G50920 (E=0.0) | GTP-binding protein-related ; Involved in the biogenesis of the 60S ribosomal subunit (667 aa)
     
 
  0.993
Bra019949
AT1G10300 (E=6e-037) | GTP-binding protein-related (94 aa)
     
 
  0.993
Bra019948
AT1G50920 (E=3e-096) | GTP-binding protein-related (261 aa)
     
 
  0.993
Bra019947
AT1G10300 (E=3e-086) | GTP-binding protein-related (338 aa)
     
 
  0.993
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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