STRINGSTRING
Bra004150 protein (Brassica rapa) - STRING interaction network
"Bra004150" - AT4G08025 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra004150AT4G08025 (E=6e-032) | unknown protein (117 aa)    
Predicted Functional Partners:
Bra038720
AT2G21655 (E=2e-033) | unknown protein (160 aa)
           
  0.521
Bra038719
AT2G21655 (E=3e-031) | unknown protein (160 aa)
           
  0.521
Bra038718
AT2G21655 (E=6e-033) | unknown protein (160 aa)
           
  0.521
Bra038709
AT2G21655 (E=1e-031) | unknown protein (164 aa)
           
  0.521
Bra029057
AT5G54062 (E=1e-075) | unknown protein (204 aa)
           
  0.521
Bra033270
AT1G01310 (E=1e-099) | allergen V5/Tpx-1-related family protein (239 aa)
           
  0.520
Bra032633
AT1G01310 (E=2e-092) | allergen V5/Tpx-1-related family protein (243 aa)
           
  0.520
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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