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Bra004158 protein (Brassica rapa) - STRING interaction network
"Bra004158" - AT1G66260 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra004158AT1G66260 (E=1e-061) | RNA and export factor-binding protein, putative (288 aa)    
Predicted Functional Partners:
Bra023312
AT5G11200 (E=1e-198) | DEAD/DEAH box helicase, putative (436 aa)
     
  0.992
Bra023311
AT5G11200 (E=4e-229) | DEAD/DEAH box helicase, putative (427 aa)
     
  0.992
Bra010976
AT1G24706 (E=0.0) | unknown protein (1816 aa)
       
  0.989
Bra008984
AT5G11200 (E=5e-102) | DEAD/DEAH box helicase, putative (426 aa)
     
  0.978
Bra008983
AT5G11200 (E=1e-128) | DEAD/DEAH box helicase, putative (472 aa)
     
  0.978
Bra006091
AT5G11200 (E=4e-097) | DEAD/DEAH box helicase, putative (524 aa)
     
  0.978
Bra033650
AT5G42920 (E=0.0) | unknown protein (812 aa)
     
  0.973
Bra002845
AT5G56130 (E=8e-170) | transducin family protein / WD-40 repeat family protein (321 aa)
     
  0.972
Bra028613
AT5G09860 (E=4e-305) | nuclear matrix protein-related (608 aa)
     
  0.968
Bra013145
AT2G13540 (E=0.0) ENS, ABH1, CBP80, ATCBP80 | ABH1 (ABA HYPERSENSITIVE 1); RNA cap binding (845 aa)
     
  0.967
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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