STRINGSTRING
Bra004160 protein (Brassica rapa) - STRING interaction network
"Bra004160" - AT1G66340 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra004160AT1G66340 (E=0.0) ETR1, EIN1, ETR | ETR1 (ETHYLENE RESPONSE 1); ethylene binding / protein histidine kinase/ two-component response regulator (736 aa)    
Predicted Functional Partners:
Bra025394
AT3G29350 (E=3e-077) AHP2 | AHP2 (HISTIDINE-CONTAINING PHOSPHOTRANSMITTER 2); histidine phosphotransfer kinase/ protein binding / signal transducer (156 aa)
       
  0.999
Bra023876
AT3G21510 (E=2e-074) AHP1 | AHP1 (HISTIDINE-CONTAINING PHOSPHOTRANSMITTER 1); histidine phosphotransfer kinase (154 aa)
       
  0.999
Bra005778
AT5G03730 (E=0.0) CTR1, SIS1 | CTR1 (CONSTITUTIVE TRIPLE RESPONSE 1); kinase/ protein binding / protein serine/threonine kinase/ protein serine/threonine/tyrosine kinase (795 aa)
     
  0.995
Bra036215
AT3G29350 (E=1e-075) AHP2 | AHP2 (HISTIDINE-CONTAINING PHOSPHOTRANSMITTER 2); histidine phosphotransfer kinase/ protein binding / signal transducer (156 aa)
       
  0.967
Bra033398
AT1G03430 (E=2e-080) AHP5 | AHP5 (HISTIDINE-CONTAINING PHOSPHOTRANSFER FACTOR 5); histidine phosphotransfer kinase (156 aa)
       
  0.967
Bra028236
AT5G39340 (E=2e-069) AHP3, ATHP2 | AHP3 (HISTIDINE-CONTAINING PHOSPHOTRANSMITTER 3); histidine phosphotransfer kinase (178 aa)
       
  0.967
Bra027169
AT3G16360 (E=6e-063) AHP4 | AHP4 (HPT PHOSPHOTRANSMITTER 4); histidine phosphotransfer kinase/ transferase, transferring phosphorus-containing groups (124 aa)
       
  0.967
Bra003551
AT1G80100 (E=8e-067) AHP6 | AHP6 (ARABIDOPSIS HISTIDINE PHOSPHOTRANSFER PROTEIN 6); histidine phosphotransfer kinase/ transferase, transferring phosphorus-containing groups (154 aa)
       
  0.967
Bra001629
AT3G16360 (E=9e-045) AHP4 | AHP4 (HPT PHOSPHOTRANSMITTER 4); histidine phosphotransfer kinase/ transferase, transferring phosphorus-containing groups (136 aa)
       
  0.967
Bra009539
AT5G03280 (E=0.0) EIN2, PIR2, CKR1, ERA3, ORE3, ORE2, ATEIN2 | EIN2 (ETHYLENE INSENSITIVE 2); transporter (1311 aa)
       
 
  0.958
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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