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Bra004172 protein (Brassica rapa) - STRING interaction network
"Bra004172" - AT1G66510 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra004172AT1G66510 (E=8e-124) | AAR2 protein family (375 aa)    
Predicted Functional Partners:
Bra009381
AT5G09390 (E=6e-120) | CD2-binding protein-related (337 aa)
       
      0.964
Bra020542
AT1G56070 (E=0.0) LOS1 | LOS1; copper ion binding / translation elongation factor/ translation factor, nucleic acid binding (945 aa)
       
 
  0.962
Bra017279
AT1G56070 (E=0.0) LOS1 | LOS1; copper ion binding / translation elongation factor/ translation factor, nucleic acid binding (878 aa)
       
 
  0.962
Bra010782
AT1G56070 (E=0.0) LOS1 | LOS1; copper ion binding / translation elongation factor/ translation factor, nucleic acid binding (843 aa)
       
 
  0.962
Bra010781
AT1G56070 (E=2e-298) LOS1 | LOS1; copper ion binding / translation elongation factor/ translation factor, nucleic acid binding (552 aa)
       
 
  0.962
Bra033025
AT3G27730 (E=0.0) RCK, MER3 | RCK (ROCK-N-ROLLERS); ATP binding / ATP-dependent helicase/ DNA helicase (1094 aa)
       
 
  0.953
Bra029333
AT5G61140 (E=0.0) | DEAD box RNA helicase, putative (2133 aa)
       
 
  0.953
Bra029460
AT1G80070 (E=2e-013) SUS2, EMB33, EMB177, EMB14 | SUS2 (ABNORMAL SUSPENSOR 2) (87 aa)
       
 
  0.946
Bra021701
AT1G80070 (E=0.0) SUS2, EMB33, EMB177, EMB14 | SUS2 (ABNORMAL SUSPENSOR 2) (2338 aa)
       
 
  0.946
Bra013431
AT1G80070 (E=0.0) SUS2, EMB33, EMB177, EMB14 | SUS2 (ABNORMAL SUSPENSOR 2) (2369 aa)
       
 
  0.946
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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