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Bra004177 protein (Brassica rapa) - STRING interaction network
"Bra004177" - AT1G66670 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra004177AT1G66670 (E=8e-148) CLPP3, NCLPP3 | CLPP3; serine-type endopeptidase (313 aa)    
Predicted Functional Partners:
Bra003063
AT5G53350 (E=2e-218) CLPX | CLPX; ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding / protein binding (558 aa)
 
  0.958
Bra029073
AT5G53350 (E=3e-169) CLPX | CLPX; ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding / protein binding (526 aa)
 
  0.958
Bra027997
AT1G33360 (E=8e-236) | ATP-dependent Clp protease ATP-binding subunit ClpX, putative (616 aa)
 
  0.958
Bra003041
AT5G49840 (E=4e-213) | ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding / protein binding (605 aa)
 
  0.957
Bra022751
AT5G50920 (E=0.0) CLPC, ATHSP93-V, HSP93-V, DCA1, CLPC1 | CLPC1; ATP binding / ATP-dependent peptidase/ ATPase (929 aa)
   
 
  0.846
Bra040976
ATCG00670 (E=7e-025) CLPP1, PCLPP | Encodes the only ClpP (caseinolytic protease) encoded within the plastid genome. Contains a highly conserved catalytic triad of Ser-type proteases (Ser-His-Asp). Part of the 350 kDa chloroplast Clp complex. The name reflects nomenclature described in Adam et. al (2001). (93 aa)
   
 
 
  0.839
Bra029922
AT3G48870 (E=0.0) ATCLPC, ATHSP93-III, HSP93-III | HSP93-III; ATP binding / ATPase/ DNA binding / nuclease/ nucleoside-triphosphatase/ nucleotide binding / protein binding (928 aa)
   
 
  0.829
Bra019170
AT4G25370 (E=7e-092) | Clp amino terminal domain-containing protein (235 aa)
   
 
  0.829
Bra018030
AT3G48870 (E=0.0) ATCLPC, ATHSP93-III, HSP93-III | HSP93-III; ATP binding / ATPase/ DNA binding / nuclease/ nucleoside-triphosphatase/ nucleotide binding / protein binding (888 aa)
   
 
  0.829
Bra029193
AT5G51070 (E=0.0) ERD1, CLPD | ERD1 (EARLY RESPONSIVE TO DEHYDRATION 1); ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding / protein binding (943 aa)
   
 
  0.822
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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