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Bra004186 protein (Brassica rapa) - STRING interaction network
"Bra004186" - AT1G66740 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra004186AT1G66740 (E=1e-082) AtSP7, SP7, SGA2, ASF1A | SGA2 (199 aa)    
Predicted Functional Partners:
Bra019432
AT3G44530 (E=0.0) HIRA | HIRA (Arabidopsis homolog of histone chaperone HIRA); nucleotide binding / protein binding (1022 aa)
       
  0.985
Bra035499
AT1G32750 (E=0.0) HAF01, HAF1, HAC13, GTD1, TAF1 | HAF01; DNA binding / histone acetyltransferase (1893 aa)
       
 
  0.969
Bra024316
AT5G64630 (E=1e-247) FAS2, NFB01, NFB1, MUB3.9 | FAS2 (FASCIATA 2); nucleotide binding / protein binding (485 aa)
     
 
  0.966
Bra040301
AT1G44900 (E=0.0) MCM2 | ATP binding / DNA binding / DNA-dependent ATPase (931 aa)
     
 
  0.959
Bra014033
AT1G44900 (E=0.0) MCM2 | ATP binding / DNA binding / DNA-dependent ATPase (927 aa)
     
 
  0.959
Bra013131
AT2G14050 (E=0.0) MCM9 | MCM9; ATP binding / DNA binding / DNA-dependent ATPase/ nucleoside-triphosphatase/ nucleotide binding (658 aa)
     
 
  0.959
Bra030763
AT1G09210 (E=2e-193) | calreticulin 2 (CRT2) (660 aa)
     
 
  0.957
Bra006859
AT5G56740 (E=2e-229) HAG2, HAC7, HAG02, HAC07 | HAG2 (HISTONE ACETYLTRANSFERASE OF THE GNAT FAMILY 2); H4 histone acetyltransferase/ histone acetyltransferase (462 aa)
     
 
  0.955
Bra002795
AT5G56740 (E=3e-225) HAG2, HAC7, HAG02, HAC07 | HAG2 (HISTONE ACETYLTRANSFERASE OF THE GNAT FAMILY 2); H4 histone acetyltransferase/ histone acetyltransferase (460 aa)
     
 
  0.955
Bra032634
AT1G01370 (E=9e-048) HTR12, CENH3 | HTR12; DNA binding (241 aa)
     
 
  0.954
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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