STRINGSTRING
Bra004192 protein (Brassica rapa) - STRING interaction network
"Bra004192" - AT5G46260 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra004192AT5G46260 (E=0.0) | disease resistance protein (TIR-NBS-LRR class), putative (1794 aa)    
Predicted Functional Partners:
Bra034308
AT2G26570 (E=6e-192) | unknown protein (647 aa)
       
 
  0.556
Bra013691
AT4G23440 (E=4e-279) | nucleoside-triphosphatase/ nucleotide binding / transmembrane receptor (935 aa)
           
  0.543
Bra025139
AT2G03880 (E=0.0) | pentatricopeptide (PPR) repeat-containing protein (630 aa)
           
  0.499
Bra034062
AT5G37150 (E=2e-096) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; BEST Arabidopsis thaliana protein match is- tRNA-splicing endonuclease positive effector-related (TAIR-AT5G52090.1); Has 4236 Blast hits to 3442 proteins in 554 species- Archae - 133; Bacteria - 787; Metazoa - 1285; Fungi - 856; Plants - 359; Viruses - 41; Other Eukaryotes - 775 (source- NCBI BLink). (1038 aa)
           
  0.497
Bra029475
AT4G05540 (E=3e-270) | tRNA-splicing endonuclease positive effector-related (862 aa)
           
  0.497
Bra028111
AT5G37150 (E=0.0) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; BEST Arabidopsis thaliana protein match is- tRNA-splicing endonuclease positive effector-related (TAIR-AT5G52090.1); Has 4236 Blast hits to 3442 proteins in 554 species- Archae - 133; Bacteria - 787; Metazoa - 1285; Fungi - 856; Plants - 359; Viruses - 41; Other Eukaryotes - 775 (source- NCBI BLink). (855 aa)
           
  0.497
Bra004128
AT1G65780 (E=2e-264) | tRNA-splicing endonuclease positive effector-related (1015 aa)
           
  0.497
Bra036265
AT4G02480 (E=0.0) | AAA-type ATPase family protein (1290 aa)
           
  0.483
Bra033356
AT1G02890 (E=0.0) | AAA-type ATPase family protein (1491 aa)
           
  0.483
Bra018548
AT4G02480 (E=0.0) | AAA-type ATPase family protein (1219 aa)
           
  0.483
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
Server load: low (6%) [HD]