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Bra004202 protein (Brassica rapa) - STRING interaction network
"Bra004202" - AT5G09730 in Brassica rapa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
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Textmining
[Homology]
Score
Bra004202AT5G09730 (E=0.0) BXL3, ATBXL3, XYL3, ATBX3, BX3 | BXL3 (beta-xylosidase 3); hydrolase, hydrolyzing O-glycosyl compounds (752 aa)    
Predicted Functional Partners:
Bra020472
AT5G24810 (E=0.0) | ABC1 family protein (999 aa)
       
  0.686
Bra009794
AT5G24810 (E=0.0) | ABC1 family protein (1032 aa)
       
  0.686
Bra000737
AT4G11150 (E=2e-113) TUF, emb2448, TUFF, VHA-E1 | TUF (VACUOLAR ATP SYNTHASE SUBUNIT E1); proton-transporting ATPase, rotational mechanism (431 aa)
       
  0.604
Bra014816
AT3G54440 (E=0.0) | glycoside hydrolase family 2 protein (1104 aa)
 
   
  0.572
Bra032400
AT1G30540 (E=8e-182) | ATPase, BadF/BadG/BcrA/BcrD-type family (351 aa)
       
  0.462
Bra024905
AT2G01110 (E=6e-136) APG2, UNE3, PGA2, TATC | APG2 (ALBINO AND PALE GREEN 2); proton motive force dependent protein transmembrane transporter (343 aa)
         
  0.459
Bra017466
AT2G01110 (E=2e-052) APG2, UNE3, PGA2, TATC | APG2 (ALBINO AND PALE GREEN 2); proton motive force dependent protein transmembrane transporter (134 aa)
         
  0.459
Bra014342
AT2G01110 (E=1e-109) APG2, UNE3, PGA2, TATC | APG2 (ALBINO AND PALE GREEN 2); proton motive force dependent protein transmembrane transporter (299 aa)
         
  0.459
Bra037659
AT2G44280 (E=2e-223) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; CONTAINS InterPro DOMAIN/s- Major facilitator superfamily, general substrate transporter (InterPro-IPR016196); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT3G60070.1); Has 781 Blast hits to 773 proteins in 246 species- Archae - 0; Bacteria - 563; Metazoa - 99; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 82 (source- NCBI BLink). (430 aa)
         
  0.443
Bra014515
AT3G60070 (E=6e-250) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- membrane; EXPRESSED IN- 24 plant structures; EXPRESSED DURING- 15 growth stages; CONTAINS InterPro DOMAIN/s- Major facilitator superfamily, general substrate transporter (InterPro-IPR016196); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT2G44280.2); Has 789 Blast hits to 778 proteins in 245 species- Archae - 0; Bacteria - 556; Metazoa - 92; Fungi - 2; Plants - 37; Viruses - 0; Other Eukaryotes - 102 (source- NCBI BLink). (459 aa)
         
  0.443
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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