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Bra004207 protein (Brassica rapa) - STRING interaction network
"Bra004207" - AT1G67170 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra004207AT1G67170 (E=4e-107) | unknown protein (344 aa)    
Predicted Functional Partners:
Bra036832
AT3G51180 (E=3e-160) | zinc finger (CCCH-type) family protein (496 aa)
       
      0.908
Bra031918
AT5G64430 (E=2e-154) | octicosapeptide/Phox/Bem1p (PB1) domain-containing protein (474 aa)
       
      0.907
Bra005797
AT5G04170 (E=1e-099) | calcium-binding EF hand family protein (411 aa)
       
      0.902
Bra024295
AT5G64430 (E=1e-074) | octicosapeptide/Phox/Bem1p (PB1) domain-containing protein (434 aa)
       
      0.897
Bra034103
AT3G10300 (E=2e-089) | calcium-binding EF hand family protein (319 aa)
       
      0.622
Bra009480
AT5G04170 (E=3e-099) | calcium-binding EF hand family protein (365 aa)
       
      0.622
Bra000510
AT2G27480 (E=2e-099) | calcium ion binding (223 aa)
       
      0.612
Bra012650
AT4G17680 (E=1e-091) | protein binding / zinc ion binding (349 aa)
       
      0.489
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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