STRINGSTRING
Bra004210 protein (Brassica rapa) - STRING interaction network
"Bra004210" - AT1G67230 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra004210AT1G67230 (E=0.0) LINC1 | LINC1 (LITTLE NUCLEI1) (1067 aa)    
Predicted Functional Partners:
Bra029862
AT3G10730 (E=4e-183) | sad1/unc-84-like 2 family protein (449 aa)
       
 
  0.580
Bra009405
AT5G04990 (E=8e-193) | sad1/unc-84 protein-related (745 aa)
       
 
  0.580
Bra034136
AT3G10650 (E=7e-275) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- 24 plant structures; EXPRESSED DURING- 14 growth stages; BEST Arabidopsis thaliana protein match is- nucleoporin-related (TAIR-AT5G20200.1); Has 51621 Blast hits to 25162 proteins in 1378 species- Archae - 161; Bacteria - 11485; Metazoa - 15659; Fungi - 10121; Plants - 1099; Viruses - 600; Other Eukaryotes - 12496 (source- NCBI BLink). (968 aa)
           
  0.514
Bra001372
AT3G10650 (E=0.0) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- 24 plant structures; EXPRESSED DURING- 14 growth stages; BEST Arabidopsis thaliana protein match is- nucleoporin-related (TAIR-AT5G20200.1); Has 51621 Blast hits to 25162 proteins in 1378 species- Archae - 161; Bacteria - 11485; Metazoa - 15659; Fungi - 10121; Plants - 1099; Viruses - 600; Other Eukaryotes - 12496 (source- NCBI BLink). (1333 aa)
           
  0.514
Bra008966
AT5G11390 (E=3e-138) | unknown protein (656 aa)
           
  0.450
Bra019437
AT3G44380 (E=2e-081) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- 19 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Water Stress and Hypersensitive response (InterPro-IPR013990), Harpin-induced 1 (InterPro-IPR010847); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT1G52330.1); Has 88 Blast hits to 87 proteins in 8 species- Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 88; Viruses - 0; Other Eukaryotes - 0 (source- NCBI BLink). (183 aa)
           
  0.448
Bra038339
AT1G68910 (E=5e-238) | unknown protein (713 aa)
           
  0.445
Bra004347
AT1G68910 (E=2e-226) | unknown protein (671 aa)
           
  0.445
Bra034785
AT3G12020 (E=0.0) | kinesin motor protein-related (970 aa)
           
  0.416
Bra031184
AT2G21380 (E=0.0) | kinesin motor protein-related (1072 aa)
           
  0.416
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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