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Bra004213 protein (Brassica rapa) - STRING interaction network
"Bra004213" - AT1G67780 in Brassica rapa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra004213AT1G67780 (E=1e-107) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- shoot apex, flower, root, seed; EXPRESSED DURING- petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s- DDT superfamily (InterPro-IPR018501), DDT subgroup (InterPro-IPR018500), Cell division cycle-associated protein (InterPro-IPR018866); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT1G67270.1); Has 280 Blast hits to 277 proteins in 72 species- Archae - 0; Bacteri [...] (616 aa)    
Predicted Functional Partners:
Bra017662
AT2G16370 (E=2e-245) THY-1 | THY-1 (THYMIDYLATE SYNTHASE 1); dihydrofolate reductase/ thymidylate synthase ; Bifunctional enzyme. Involved in de novo dTMP biosynthesis. Key enzyme in folate metabolism (504 aa)
     
        0.836
Bra013079
AT2G16370 (E=4e-268) THY-1 | THY-1 (THYMIDYLATE SYNTHASE 1); dihydrofolate reductase/ thymidylate synthase ; Bifunctional enzyme. Involved in de novo dTMP biosynthesis. Key enzyme in folate metabolism (618 aa)
     
        0.836
Bra011543
AT2G16370 (E=2e-257) THY-1 | THY-1 (THYMIDYLATE SYNTHASE 1); dihydrofolate reductase/ thymidylate synthase ; Bifunctional enzyme. Involved in de novo dTMP biosynthesis. Key enzyme in folate metabolism (499 aa)
     
        0.836
Bra000581
AT2G21550 (E=6e-203) | bifunctional dihydrofolate reductase-thymidylate synthase, putative / DHFR-TS, putative (452 aa)
     
        0.836
Bra030212
AT2G22740 (E=2e-238) SUVH6 | SUVH6; methyl-CpG binding / methyl-CpNpG binding / methyl-CpNpN binding / methyltransferase (792 aa)
     
        0.624
Bra028776
AT5G04940 (E=3e-253) SUVH1 | SUVH1 (SU(VAR)3-9 HOMOLOG 1); histone methyltransferase (635 aa)
     
        0.624
Bra025949
AT1G17770 (E=2e-168) SUVH7, SDG17 | SUVH7 (SU(VAR)3-9 HOMOLOG 7); DNA binding / histone-lysine N-methyltransferase/ zinc ion binding (893 aa)
     
        0.624
Bra021840
AT2G33290 (E=2e-223) SUVH2, SDG3, ATSUVH2 | SUVH2 (SU(VAR)3-9 HOMOLOG 2); histone methyltransferase (637 aa)
     
        0.624
Bra009409
AT5G04940 (E=1e-273) SUVH1 | SUVH1 (SU(VAR)3-9 HOMOLOG 1); histone methyltransferase (665 aa)
     
        0.624
Bra005511
AT2G33290 (E=1e-172) SUVH2, SDG3, ATSUVH2 | SUVH2 (SU(VAR)3-9 HOMOLOG 2); histone methyltransferase (613 aa)
     
        0.624
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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