STRINGSTRING
Bra004217 protein (Brassica rapa) - STRING interaction network
"Bra004217" - AT1G67310 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra004217AT1G67310 (E=2e-255) | calmodulin binding / transcription regulator (997 aa)    
Predicted Functional Partners:
Bra007664
AT3G62140 (E=6e-067) | unknown protein (204 aa)
       
      0.612
Bra003489
AT3G62140 (E=7e-060) | unknown protein (191 aa)
       
      0.612
Bra033893
AT3G23000 (E=5e-167) CIPK7, SnRK3.10, PKS7, ATSRPK1, ATSR2 | CIPK7 (CBL-INTERACTING PROTEIN KINASE 7); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase (422 aa)
           
  0.480
Bra023777
AT3G23000 (E=3e-155) CIPK7, SnRK3.10, PKS7, ATSRPK1, ATSR2 | CIPK7 (CBL-INTERACTING PROTEIN KINASE 7); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase (414 aa)
           
  0.480
Bra031786
AT1G11870 (E=3e-260) ATSRS, SRS | SRS (SERYL-TRNA SYNTHETASE); serine-tRNA ligase (517 aa)
           
  0.449
Bra016808
AT1G11870 (E=2e-252) ATSRS, SRS | SRS (SERYL-TRNA SYNTHETASE); serine-tRNA ligase (512 aa)
           
  0.449
Bra033370
AT1G03060 (E=0.0) | WD-40 repeat family protein / beige-related (3552 aa)
     
   
  0.429
Bra000869
AT4G02660 (E=0.0) | WD-40 repeat family protein / beige-related (3575 aa)
     
   
  0.429
Bra015164
AT2G05310 (E=5e-041) | unknown protein (124 aa)
           
  0.418
Bra014764
AT3G55270 (E=3e-237) MKP1, ATMKP1 | MKP1 (MITOGEN-ACTIVATED PROTEIN KINASE PHOSPHATASE 1); MAP kinase tyrosine/serine/threonine phosphatase (711 aa)
     
   
  0.404
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
Server load: low (10%) [HD]