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Bra004218 protein (Brassica rapa) - STRING interaction network
"Bra004218" - AT1G67325 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra004218AT1G67325 (E=7e-133) | binding / zinc ion binding (295 aa)    
Predicted Functional Partners:
Bra036534
AT5G25150 (E=0.0) TAF5 | TAF5 (TBP-ASSOCIATED FACTOR 5); nucleotide binding / transcription regulator (668 aa)
     
      0.910
Bra020485
AT5G25150 (E=0.0) TAF5 | TAF5 (TBP-ASSOCIATED FACTOR 5); nucleotide binding / transcription regulator (666 aa)
     
      0.910
Bra039907
AT2G18000 (E=4e-075) TAF14 | TAF14 (TBP-associated factor 14) (258 aa)
       
      0.901
Bra025069
AT5G45600 (E=9e-134) GAS41, TAF14B | GAS41; protein binding (261 aa)
       
      0.901
Bra035961
AT5G43130 (E=0.0) TAF4, TAF4B | TAF4 (TBP-ASSOCIATED FACTOR 4); transcription initiation factor (779 aa)
       
      0.898
Bra033662
AT5G43130 (E=5e-162) TAF4, TAF4B | TAF4 (TBP-ASSOCIATED FACTOR 4); transcription initiation factor (771 aa)
       
      0.898
Bra030061
AT1G27720 (E=3e-132) TAF4, TAF4B | TAF4B (TBP-ASSOCIATED FACTOR 4B); transcription initiation factor (803 aa)
       
      0.898
Bra034092
AT3G10070 (E=1e-029) TAF12, TAFII58 | TAF12 (TBP-ASSOCIATED FACTOR 12); DNA binding / transcription initiation factor (269 aa)
       
      0.896
Bra030989
AT1G17440 (E=8e-071) EER4, TAF12B | EER4 (ENHANCED ETHYLENE RESPONSE 4); DNA binding / transcription initiation factor (609 aa)
       
      0.896
Bra029816
AT3G10070 (E=4e-144) TAF12, TAFII58 | TAF12 (TBP-ASSOCIATED FACTOR 12); DNA binding / transcription initiation factor (527 aa)
       
      0.896
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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