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Bra004220 protein (Brassica rapa) - STRING interaction network
"Bra004220" - AT1G67340 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra004220AT1G67340 (E=2e-176) | zinc finger (MYND type) family protein / F-box family protein (372 aa)    
Predicted Functional Partners:
Bra013131
AT2G14050 (E=0.0) MCM9 | MCM9; ATP binding / DNA binding / DNA-dependent ATPase/ nucleoside-triphosphatase/ nucleotide binding (658 aa)
           
  0.574
Bra016200
AT1G70590 (E=5e-156) | F-box family protein (346 aa)
           
  0.541
Bra031377
AT1G22250 (E=2e-071) | unknown protein (199 aa)
           
  0.483
Bra012317
AT1G22250 (E=8e-067) | unknown protein (199 aa)
           
  0.483
Bra005753
AT3G28410 (E=6e-117) | F-box family protein (469 aa)
           
  0.483
Bra001142
AT3G16740 (E=4e-121) | F-box family protein (389 aa)
           
  0.479
Bra035607
AT5G56180 (E=2e-224) ATARP8, ARP8 | ATARP8 (ACTIN-RELATED PROTEIN 8); structural constituent of cytoskeleton (466 aa)
           
  0.474
Bra006632
AT5G22730 (E=2e-086) | F-box family protein (453 aa)
           
  0.457
Bra009548
AT5G03160 (E=8e-218) ATP58IPK | ATP58IPK (ARABIDOPSIS HOMOLOG OF MAMALLIAN P58IPK); binding / heat shock protein binding (484 aa)
           
  0.408
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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