STRINGSTRING
Bra004222 protein (Brassica rapa) - STRING interaction network
"Bra004222" - AT1G67370 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra004222AT1G67370 (E=4e-265) ASY1, ATASY1 | ASY1 (ASYNAPTIC 1); DNA binding (599 aa)    
Predicted Functional Partners:
Bra024159
AT4G29170 (E=4e-103) ATMND1 | ATMND1 (217 aa)
       
 
  0.954
Bra004486
AT2G46980 (E=3e-314) | unknown protein (769 aa)
       
 
  0.947
Bra023796
AT3G22880 (E=6e-171) ATDMC1, DMC1, ARLIM15 | DMC1 (DISRUPTION OF MEIOTIC CONTROL 1); ATP binding / DNA binding / DNA-dependent ATPase/ damaged DNA binding / nucleoside-triphosphatase/ nucleotide binding / protein binding (332 aa)
       
 
  0.926
Bra004897
AT2G45280 (E=1e-151) ATRAD51C, RAD51C | ATRAD51C; ATP binding / damaged DNA binding / protein binding / recombinase/ single-stranded DNA binding (370 aa)
       
 
  0.914
Bra001890
AT3G22880 (E=3e-030) ATDMC1, DMC1, ARLIM15 | DMC1 (DISRUPTION OF MEIOTIC CONTROL 1); ATP binding / DNA binding / DNA-dependent ATPase/ damaged DNA binding / nucleoside-triphosphatase/ nucleotide binding / protein binding (84 aa)
       
 
  0.904
Bra006580
AT5G20850 (E=6e-192) ATRAD51, RAD51 | ATRAD51; ATP binding / DNA binding / DNA-dependent ATPase/ damaged DNA binding / nucleoside-triphosphatase/ nucleotide binding / protein binding / sequence-specific DNA binding (342 aa)
       
 
  0.794
Bra002334
AT5G20850 (E=1e-189) ATRAD51, RAD51 | ATRAD51; ATP binding / DNA binding / DNA-dependent ATPase/ damaged DNA binding / nucleoside-triphosphatase/ nucleotide binding / protein binding / sequence-specific DNA binding (342 aa)
       
 
  0.777
Bra006820
AT5G57450 (E=3e-126) XRCC3, ATXRCC3 | XRCC3; ATP binding / damaged DNA binding / protein binding / single-stranded DNA binding (331 aa)
       
 
  0.740
Bra009115
AT5G05490 (E=4e-253) SYN1, ATREC8, REC8 | SYN1 (SYNAPTIC 1) (614 aa)
       
 
  0.735
Bra035691
AT2G28560 (E=7e-182) ATRAD51B, RAD51B | RAD51B; recombinase (464 aa)
       
 
  0.727
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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