STRINGSTRING
Bra004226 protein (Brassica rapa) - STRING interaction network
"Bra004226" - AT1G67440 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra004226AT1G67440 (E=7e-123) emb1688 | emb1688 (embryo defective 1688); GTP binding / GTPase (463 aa)    
Predicted Functional Partners:
Bra035637
AT5G56940 (E=3e-066) | ribosomal protein S16 family protein (136 aa)
     
  0.925
Bra022006
AT5G56940 (E=2e-018) | ribosomal protein S16 family protein (160 aa)
     
  0.925
Bra011546
AT4G34620 (E=4e-056) SSR16 | SSR16 (SMALL SUBUNIT RIBOSOMAL PROTEIN 16); structural constituent of ribosome (113 aa)
     
  0.925
Bra006841
AT5G56940 (E=2e-019) | ribosomal protein S16 family protein (131 aa)
     
  0.925
Bra002779
AT5G56940 (E=2e-065) | ribosomal protein S16 family protein (131 aa)
     
  0.925
Bra035439
AT1G58380 (E=7e-124) XW6 | XW6; structural constituent of ribosome (280 aa)
       
  0.921
Bra027857
AT1G58380 (E=1e-015) XW6 | XW6; structural constituent of ribosome (64 aa)
       
  0.921
Bra021879
AT2G33800 (E=5e-078) | ribosomal protein S5 family protein (302 aa)
       
  0.921
Bra016913
AT1G58380 (E=1e-119) XW6 | XW6; structural constituent of ribosome (285 aa)
       
  0.921
Bra008512
AT1G64880 (E=3e-213) | ribosomal protein S5 family protein (500 aa)
       
  0.921
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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