STRINGSTRING
Bra004227 protein (Brassica rapa) - STRING interaction network
"Bra004227" - AT1G67480 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra004227AT1G67480 (E=4e-183) | kelch repeat-containing F-box family protein (373 aa)    
Predicted Functional Partners:
Bra020758
AT3G06330 (E=8e-169) | zinc finger (C3HC4-type RING finger) family protein (443 aa)
     
   
  0.570
Bra001193
AT3G06330 (E=9e-151) | zinc finger (C3HC4-type RING finger) family protein (436 aa)
     
   
  0.570
Bra038760
AT4G21720 (E=5e-054) | unknown protein (137 aa)
           
  0.547
Bra022198
AT3G17120 (E=3e-065) | unknown protein (221 aa)
           
  0.547
Bra013551
AT4G21720 (E=1e-052) | unknown protein (136 aa)
           
  0.547
Bra001654
AT3G17120 (E=3e-063) | unknown protein (211 aa)
           
  0.517
Bra009931
AT5G27920 (E=4e-298) | F-box family protein (640 aa)
         
  0.510
Bra040226
AT3G06330 (E=7e-143) | zinc finger (C3HC4-type RING finger) family protein (421 aa)
     
   
  0.509
Bra024412
AT5G65685 (E=4e-171) | soluble glycogen synthase-related (593 aa)
           
  0.474
Bra032364
AT1G30200 (E=2e-177) | F-box family protein (374 aa)
           
  0.473
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
Server load: low (10%) [HD]