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Bra004232 protein (Brassica rapa) - STRING interaction network
"Bra004232" - AT1G65030 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
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Textmining
[Homology]
Score
Bra004232AT1G65030 (E=1e-172) | transducin family protein / WD-40 repeat family protein (344 aa)    
Predicted Functional Partners:
Bra006260
AT5G14520 (E=9e-275) | pescadillo-related ; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit (592 aa)
     
 
  0.988
Bra040357
AT3G07050 (E=1e-165) | GTP-binding family protein (615 aa)
     
   
  0.980
Bra029617
AT3G07050 (E=4e-230) | GTP-binding family protein (594 aa)
     
   
  0.980
Bra001232
AT3G07050 (E=2e-216) | GTP-binding family protein (584 aa)
     
   
  0.980
Bra000863
AT4G02790 (E=5e-172) | GTP-binding family protein (370 aa)
     
   
  0.980
Bra028325
AT3G23620 (E=5e-130) | brix domain-containing protein (316 aa)
     
 
  0.971
Bra014967
AT3G23620 (E=5e-129) | brix domain-containing protein (315 aa)
     
 
  0.971
Bra040830
AT3G22660 (E=6e-127) | rRNA processing protein-related (294 aa)
     
 
  0.971
Bra023812
AT3G22660 (E=3e-124) | rRNA processing protein-related (296 aa)
     
 
  0.971
Bra001877
AT3G22660 (E=5e-120) | rRNA processing protein-related (286 aa)
     
 
  0.971
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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