STRINGSTRING
Bra004233 protein (Brassica rapa) - STRING interaction network
"Bra004233" - AT5G01480 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra004233AT5G01480 (E=7e-127) | DC1 domain-containing protein (512 aa)    
Predicted Functional Partners:
Bra031551
AT1G07080 (E=8e-113) | gamma interferon responsive lysosomal thiol reductase family protein / GILT family protein (259 aa)
           
  0.581
Bra009642
AT5G01660 (E=8e-173) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- 9 plant structures; EXPRESSED DURING- 6 growth stages; CONTAINS InterPro DOMAIN/s- Kelch repeat type 1 (InterPro-IPR006652), Galactose oxidase/kelch, beta-propeller (InterPro-IPR011043), Development and cell death domain (InterPro-IPR013989), Kelch related (InterPro-IPR013089), Kelch-type beta propeller (InterPro-IPR015915); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT3G11000.2); Has 12390 Blast hits to 5 [...] (620 aa)
           
  0.581
Bra015550
AT1G07080 (E=3e-106) | gamma interferon responsive lysosomal thiol reductase family protein / GILT family protein (260 aa)
           
  0.549
Bra005678
AT5G01590 (E=5e-269) | unknown protein (519 aa)
           
  0.501
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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