STRINGSTRING
Bra004236 protein (Brassica rapa) - STRING interaction network
"Bra004236" - AT1G67580 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra004236AT1G67580 (E=4e-284) | protein kinase family protein (709 aa)    
Predicted Functional Partners:
Bra032800
AT2G26430 (E=9e-087) RCY1, ATRCY1 | RCY1 (ARGININE-RICH CYCLIN 1); cyclin-dependent protein kinase regulator (622 aa)
     
  0.952
Bra012508
AT2G26430 (E=5e-169) RCY1, ATRCY1 | RCY1 (ARGININE-RICH CYCLIN 1); cyclin-dependent protein kinase regulator (413 aa)
     
  0.952
Bra032297
AT1G29220 (E=2e-113) | transcriptional regulator family protein (325 aa)
     
      0.907
Bra029489
AT3G24690 (E=4e-030) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; BEST Arabidopsis thaliana protein match is- glycine-rich protein (TAIR-AT1G27090.1); Has 28 Blast hits to 27 proteins in 8 species- Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 2 (source- NCBI BLink). (161 aa)
       
      0.892
Bra025087
AT5G45190 (E=5e-257) | cyclin family protein (567 aa)
     
  0.790
Bra031514
AT4G19560 (E=6e-080) CYCT1;2 | CYCT1;2; cyclin-dependent protein kinase (316 aa)
     
  0.787
Bra030056
AT1G27630 (E=6e-161) CYCT1;3 | CYCT1;3 (CYCLIN T 1;3); cyclin-dependent protein kinase (313 aa)
     
  0.787
Bra021950
AT5G45190 (E=6e-239) | cyclin family protein (559 aa)
     
  0.787
Bra020954
AT4G19600 (E=7e-212) CYCT1;4 | CYCT1;4; cyclin-dependent protein kinase (527 aa)
     
  0.787
Bra013402
AT4G19560 (E=1e-115) CYCT1;2 | CYCT1;2; cyclin-dependent protein kinase (405 aa)
     
  0.787
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
Server load: medium (43%) [HD]