STRINGSTRING
Bra004243 protein (Brassica rapa) - STRING interaction network
"Bra004243" - AT1G67650 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra004243AT1G67650 (E=3e-258) | 7S RNA binding ; Signal-recognition-particle assembly has a crucial role in targeting secretory proteins to the rough endoplasmic reticulum membrane (660 aa)    
Predicted Functional Partners:
Bra036933
AT5G61970 (E=2e-024) | signal recognition particle-related / SRP-related (77 aa)
     
  0.989
Bra029296
AT5G61970 (E=4e-302) | signal recognition particle-related / SRP-related ; Signal-recognition-particle assembly has a crucial role in targeting secretory proteins to the rough endoplasmic reticulum membrane (603 aa)
     
  0.989
Bra010045
AT5G61970 (E=2e-296) | signal recognition particle-related / SRP-related ; Signal-recognition-particle assembly has a crucial role in targeting secretory proteins to the rough endoplasmic reticulum membrane (605 aa)
     
  0.989
Bra032242
AT1G48160 (E=5e-058) | signal recognition particle 19 kDa protein, putative / SRP19, putative (145 aa)
     
  0.984
Bra014104
AT1G48160 (E=4e-054) | signal recognition particle 19 kDa protein, putative / SRP19, putative (146 aa)
     
  0.984
Bra037696
AT2G43640 (E=7e-032) | signal recognition particle 14 kDa family protein / SRP14 family protein (108 aa)
       
  0.979
Bra037694
AT2G43640 (E=2e-039) | signal recognition particle 14 kDa family protein / SRP14 family protein (122 aa)
       
  0.979
Bra004775
AT2G43640 (E=5e-046) | signal recognition particle 14 kDa family protein / SRP14 family protein (303 aa)
       
  0.979
Bra000316
AT2G43640 (E=1e-030) | signal recognition particle 14 kDa family protein / SRP14 family protein (109 aa)
       
  0.976
Bra028809
AT5G03940 (E=4e-249) FFC, 54CP, CPSRP54, SRP54CP | CPSRP54 (CHLOROPLAST SIGNAL RECOGNITION PARTICLE 54 KDA SUBUNIT); 7S RNA binding / GTP binding / mRNA binding / signal sequence binding (564 aa)
     
  0.969
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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