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Bra004244 protein (Brassica rapa) - STRING interaction network
"Bra004244" - AT1G67690 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra004244AT1G67690 (E=1e-266) | metalloendopeptidase (956 aa)    
Predicted Functional Partners:
Bra037363
AT4G01320 (E=5e-218) ATSTE24, STE24 | ATSTE24; endopeptidase/ metalloendopeptidase (412 aa)
       
 
  0.893
Bra000954
AT4G01320 (E=2e-221) ATSTE24, STE24 | ATSTE24; endopeptidase/ metalloendopeptidase (424 aa)
       
 
  0.893
Bra038025
AT1G55880 (E=1e-194) | pyridoxal-5’-phosphate-dependent enzyme, beta family protein (432 aa)
     
      0.598
Bra017161
AT2G37690 (E=0.0) | phosphoribosylaminoimidazole carboxylase, putative / AIR carboxylase, putative (691 aa)
   
   
  0.567
Bra000013
AT2G37690 (E=7e-303) | phosphoribosylaminoimidazole carboxylase, putative / AIR carboxylase, putative (671 aa)
   
   
  0.567
Bra028272
AT5G51740 (E=7e-202) | peptidase M48 family protein (431 aa)
       
 
  0.523
Bra025250
AT3G27110 (E=3e-172) | peptidase M48 family protein (342 aa)
       
 
  0.523
Bra028796
AT5G04130 (E=0.0) | DNA topoisomerase, ATP-hydrolyzing, putative / DNA topoisomerase II, putative / DNA gyrase, putative ; A type II topoisomerase that negatively supercoils closed circular double-stranded DNA in an ATP-dependent manner (997 aa)
         
  0.448
Bra040811
AT4G13780 (E=0.0) | methionine--tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS, putative (802 aa)
   
   
  0.442
Bra032735
AT4G13780 (E=0.0) | methionine--tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS, putative (792 aa)
   
   
  0.442
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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