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Bra004251 protein (Brassica rapa) - STRING interaction network
"Bra004251" - AT1G67730 in Brassica rapa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra004251AT1G67730 (E=4e-164) YBR159, KCR1 | YBR159; ketoreductase/ oxidoreductase (318 aa)    
Predicted Functional Partners:
Bra007154
AT3G55360 (E=7e-174) CER10, ECR, ATTSC13, TSC13 | CER10; 3-oxo-5-alpha-steroid 4-dehydrogenase/ fatty acid elongase/ trans-2-enoyl-CoA reductase (NADPH) (310 aa)
     
 
  0.957
Bra006062
AT5G10480 (E=9e-105) PAS2, PEP | PAS2 (PASTICCINO 2); enoyl-CoA hydratase/ protein tyrosine phosphatase (231 aa)
     
  0.943
Bra004034
AT1G68530 (E=6e-279) CUT1, POP1, CER6, G2, KCS6 | KCS6 (3-KETOACYL-COA SYNTHASE 6); catalytic/ transferase, transferring acyl groups other than amino-acyl groups (492 aa)
         
  0.940
Bra020290
AT5G59770 (E=2e-097) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- 22 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Protein-tyrosine phosphatase-like, PTPLA (InterPro-IPR007482); BEST Arabidopsis thaliana protein match is- PAS2 (PASTICCINO 2); enoyl-CoA hydratase/ protein tyrosine phosphatase (TAIR-AT5G10480.2); Has 525 Blast hits to 525 proteins in 144 species- Archae - 0; Bacteria - 0; Metazoa - 286; Fungi - 120; Plants - 70; Viruses - 0; Other Eukaryotes - [...] (224 aa)
     
  0.940
Bra033283
AT1G01120 (E=2e-261) KCS1 | KCS1 (3-KETOACYL-COA SYNTHASE 1); acyltransferase/ fatty acid elongase (529 aa)
         
  0.936
Bra007766
AT2G26250 (E=2e-290) FDH, KCS10 | KCS10 (3-KETOACYL-COA SYNTHASE 10); acyltransferase/ catalytic/ transferase, transferring acyl groups other than amino-acyl groups (547 aa)
     
 
  0.934
Bra032621
AT1G01120 (E=1e-193) KCS1 | KCS1 (3-KETOACYL-COA SYNTHASE 1); acyltransferase/ fatty acid elongase (491 aa)
         
  0.933
Bra031081
AT1G19440 (E=5e-273) KCS4 | KCS4 (3-KETOACYL-COA SYNTHASE 4); acyltransferase/ catalytic/ transferase, transferring acyl groups other than amino-acyl groups (511 aa)
         
  0.933
Bra025738
AT1G19440 (E=1e-271) KCS4 | KCS4 (3-KETOACYL-COA SYNTHASE 4); acyltransferase/ catalytic/ transferase, transferring acyl groups other than amino-acyl groups (506 aa)
         
  0.920
Bra009413
AT2G26640 (E=1e-274) KCS11 | KCS11 (3-KETOACYL-COA SYNTHASE 11); acyltransferase/ catalytic/ transferase, transferring acyl groups other than amino-acyl groups (517 aa)
         
  0.900
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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