STRINGSTRING
Bra004253 protein (Brassica rapa) - STRING interaction network
"Bra004253" - AT3G26100 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra004253AT3G26100 (E=2e-175) | regulator of chromosome condensation (RCC1) family protein (518 aa)    
Predicted Functional Partners:
Bra035562
AT5G55190 (E=9e-121) RAN3, ATRAN3 | RAN3 (RAN GTPASE 3); GTP binding / GTPase/ protein binding ; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle (221 aa)
     
  0.941
Bra020079
AT5G19990 (E=6e-228) RPT6A, ATSUG1 | RPT6A (REGULATORY PARTICLE TRIPLE-A ATPASE 6A); ATPase (721 aa)
     
  0.941
Bra006530
AT5G20010 (E=2e-118) RAN-1, RAN1, ATRAN1 | RAN-1; GTP binding / GTPase/ protein binding ; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle (221 aa)
     
  0.941
Bra002926
AT5G55190 (E=4e-119) RAN3, ATRAN3 | RAN3 (RAN GTPASE 3); GTP binding / GTPase/ protein binding ; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle (221 aa)
     
  0.941
Bra040432
AT3G63130 (E=2e-222) RANGAP1 | RANGAP1 (RAN GTPASE ACTIVATING PROTEIN 1); RAN GTPase activator/ protein binding (536 aa)
     
  0.863
Bra026911
AT5G19320 (E=8e-039) RANGAP2 | RANGAP2 (RAN GTPASE ACTIVATING PROTEIN 2); RAN GTPase activator (132 aa)
     
  0.863
Bra020788
AT3G06000 (E=3e-064) | leucine-rich repeat family protein (236 aa)
     
  0.863
Bra020034
AT5G19320 (E=1e-042) RANGAP2 | RANGAP2 (RAN GTPASE ACTIVATING PROTEIN 2); RAN GTPase activator (246 aa)
     
  0.863
Bra013834
AT3G63130 (E=1e-031) RANGAP1 | RANGAP1 (RAN GTPASE ACTIVATING PROTEIN 1); RAN GTPase activator/ protein binding (132 aa)
     
  0.863
Bra007730
AT3G63130 (E=1e-219) RANGAP1 | RANGAP1 (RAN GTPASE ACTIVATING PROTEIN 1); RAN GTPase activator/ protein binding (535 aa)
     
  0.863
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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