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Bra004254 protein (Brassica rapa) - STRING interaction network
"Bra004254" - AT1G67750 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra004254AT1G67750 (E=6e-211) | pectate lyase family protein (406 aa)    
Predicted Functional Partners:
Bra035579
AT5G55590 (E=2e-150) QRT1 | QRT1 (QUARTET 1); pectinesterase (378 aa)
       
  0.885
Bra002891
AT5G55590 (E=1e-097) QRT1 | QRT1 (QUARTET 1); pectinesterase (409 aa)
       
  0.885
Bra033083
AT3G29090 (E=1e-184) PME31, ATPME31 | pectinesterase family protein (317 aa)
       
  0.882
Bra025376
AT3G29090 (E=2e-186) PME31, ATPME31 | pectinesterase family protein (317 aa)
       
  0.882
Bra034140
AT3G10720 (E=6e-297) | pectinesterase, putative (613 aa)
       
  0.875
Bra031771
AT1G11580 (E=2e-238) ATPMEPCRA, PMEPCRA | PMEPCRA (METHYLESTERASE PCR A); enzyme inhibitor/ pectinesterase ; Acts in the modification of cell walls via demethylesterification of cell wall pectin (452 aa)
       
  0.875
Bra009406
AT5G04970 (E=2e-279) | pectinesterase, putative (640 aa)
       
  0.875
Bra005833
AT5G04970 (E=8e-279) | pectinesterase, putative (593 aa)
       
  0.875
Bra034960
AT3G43270 (E=2e-238) | pectinesterase family protein ; Acts in the modification of cell walls via demethylesterification of cell wall pectin (526 aa)
       
  0.873
Bra034553
AT4G33220 (E=9e-238) PME44, ATPME44 | enzyme inhibitor/ pectinesterase (504 aa)
       
  0.873
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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