STRINGSTRING
Bra004258 protein (Brassica rapa) - STRING interaction network
"Bra004258" - AT1G17770 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra004258AT1G17770 (E=1e-191) SUVH7, SDG17 | SUVH7 (SU(VAR)3-9 HOMOLOG 7); DNA binding / histone-lysine N-methyltransferase/ zinc ion binding (919 aa)    
Predicted Functional Partners:
Bra039939
AT5G49160 (E=0.0) MET1, MET2, METI, DDM2, DMT01, DMT1 | MET1 (METHYLTRANSFERASE 1); methyltransferase (1528 aa)
   
  0.957
Bra030191
AT5G49160 (E=0.0) MET1, MET2, METI, DDM2, DMT01, DMT1 | MET1 (METHYLTRANSFERASE 1); methyltransferase (1520 aa)
   
  0.957
Bra010026
AT5G49160 (E=0.0) MET1, MET2, METI, DDM2, DMT01, DMT1 | MET1 (METHYLTRANSFERASE 1); methyltransferase (1032 aa)
   
  0.957
Bra024340
AT1G69770 (E=3e-209) CMT3 | CMT3 (chromomethylase 3); DNA (cytosine-5-)-methyltransferase (805 aa)
   
  0.956
Bra019857
AT1G80740 (E=2e-085) CMT1, DMT4 | CMT1 (CHROMOMETHYLASE 1); DNA binding / chromatin binding (712 aa)
   
  0.956
Bra013370
AT4G19020 (E=0.0) CMT2 | CMT2 (chromomethylase 2); DNA binding / chromatin binding (1141 aa)
   
  0.956
Bra009843
AT5G25480 (E=1e-121) DNMT2 | DNMT2 (DNA METHYLTRANSFERASE-2); DNA binding (375 aa)
   
  0.956
Bra000162
AT2G40030 (E=0.0) NRPD1B, DRD3, ATNRPD1B, DMS5, NRPE1 | NRPD1B; DNA binding / DNA-directed RNA polymerase ; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (2059 aa)
       
  0.929
Bra023629
AT5G17690 (E=3e-056) TFL2, LHP1 | TFL2 (TERMINAL FLOWER 2); DNA binding / methylated histone residue binding (375 aa)
       
  0.926
Bra006417
AT5G17690 (E=6e-021) TFL2, LHP1 | TFL2 (TERMINAL FLOWER 2); DNA binding / methylated histone residue binding (324 aa)
       
  0.926
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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