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Bra004263 protein (Brassica rapa) - STRING interaction network
"Bra004263" - AT1G67830 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra004263AT1G67830 (E=2e-187) ATFXG1 | ATFXG1 (alpha-fucosidase 1); alpha-L-fucosidase/ carboxylesterase (370 aa)    
Predicted Functional Partners:
Bra011514
AT4G34260 (E=0.0) FUC95A | FUC95A; 1,2-alpha-L-fucosidase (796 aa)
         
  0.671
Bra034388
AT2G28100 (E=3e-221) ATFUC1 | ATFUC1 (alpha-L-fucosidase 1); alpha-L-fucosidase (496 aa)
         
  0.557
Bra035407
AT1G68560 (E=0.0) ATXYL1, XYL1 | XYL1 (ALPHA-XYLOSIDASE 1); alpha-N-arabinofuranosidase/ hydrolase, hydrolyzing O-glycosyl compounds / xylan 1,4-beta-xylosidase (927 aa)
     
   
  0.534
Bra004319
AT1G68560 (E=0.0) ATXYL1, XYL1 | XYL1 (ALPHA-XYLOSIDASE 1); alpha-N-arabinofuranosidase/ hydrolase, hydrolyzing O-glycosyl compounds / xylan 1,4-beta-xylosidase (926 aa)
     
   
  0.534
Bra004031
AT1G68560 (E=0.0) ATXYL1, XYL1 | XYL1 (ALPHA-XYLOSIDASE 1); alpha-N-arabinofuranosidase/ hydrolase, hydrolyzing O-glycosyl compounds / xylan 1,4-beta-xylosidase (924 aa)
     
   
  0.534
Bra009292
AT5G07080 (E=7e-191) | transferase family protein (443 aa)
           
  0.477
Bra006111
AT5G11720 (E=0.0) | alpha-glucosidase 1 (AGLU1) (891 aa)
           
  0.440
Bra032626
AT1G01220 (E=0.0) | GHMP kinase-related (1061 aa)
           
  0.406
Bra005373
AT2G35020 (E=8e-245) | UTP--glucose-1-phosphate uridylyltransferase family protein (501 aa)
           
  0.406
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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