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Bra004271 protein (Brassica rapa) - STRING interaction network
"Bra004271" - AT1G67940 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra004271AT1G67940 (E=2e-127) ATNAP3 | ATNAP3; transporter (264 aa)    
Predicted Functional Partners:
Bra005204
AT2G37330 (E=2e-128) ALS3 | ALS3 (ALUMINUM SENSITIVE 3) (273 aa)
     
 
  0.746
Bra017194
AT2G37330 (E=4e-074) ALS3 | ALS3 (ALUMINUM SENSITIVE 3) (188 aa)
     
 
  0.745
Bra000339
AT2G44060 (E=9e-153) | late embryogenesis abundant family protein / LEA family protein (777 aa)
   
     
  0.579
Bra006584
AT5G20890 (E=2e-288) | chaperonin, putative ; Molecular chaperone; assists the folding of proteins upon ATP hydrolysis (748 aa)
     
 
  0.568
Bra032035
AT2G25180 (E=4e-256) ARR12 | ARR12 (ARABIDOPSIS RESPONSE REGULATOR 12); transcription factor/ two-component response regulator (581 aa)
         
  0.547
Bra028573
AT5G10720 (E=0.0) AHK5, CKI2 | AHK5 (ARABIDOPSIS HISTIDINE KINASE 5); protein histidine kinase (911 aa)
         
  0.547
Bra026635
AT2G01760 (E=1e-136) ARR14 | ARR14 (ARABIDOPSIS RESPONSE REGULATOR 14); transcription factor/ two-component response regulator (377 aa)
         
  0.547
Bra023972
AT4G31920 (E=3e-178) ARR10 | ARR10 (ARABIDOPSIS RESPONSE REGULATOR 10); transcription factor/ two-component response regulator (518 aa)
         
  0.547
Bra022183
AT3G16857 (E=3e-258) ARR1 | ARR1 (ARABIDOPSIS RESPONSE REGULATOR 1); transcription factor/ two-component response regulator (681 aa)
         
  0.547
Bra012743
AT4G16110 (E=6e-132) ARR2 | ARR2 (ARABIDOPSIS RESPONSE REGULATOR 2); transcription factor/ two-component response regulator (592 aa)
         
  0.547
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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