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Bra004273 protein (Brassica rapa) - STRING interaction network
"Bra004273" - AT1G67980 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra004273AT1G67980 (E=8e-118) CCOAMT | CCoAMT; caffeoyl-CoA O-methyltransferase (236 aa)    
Predicted Functional Partners:
Bra005605
AT2G32600 (E=2e-111) | hydroxyproline-rich glycoprotein family protein (276 aa)
       
      0.604
Bra039743
AT1G66120 (E=2e-268) | acyl-activating enzyme 11 (AAE11) (579 aa)
       
  0.574
Bra038189
AT1G65890 (E=1e-277) AAE12 | AAE12 (ACYL ACTIVATING ENZYME 12); catalytic (584 aa)
       
  0.574
Bra037198
AT1G20480 (E=2e-038) | 4-coumarate--CoA ligase family protein / 4-coumaroyl-CoA synthase family protein (187 aa)
       
  0.574
Bra036646
AT1G62940 (E=1e-268) ACOS5 | ACOS5 (ACYL-COA SYNTHETASE 5); 4-coumarate-CoA ligase/ long-chain-fatty-acid-CoA ligase/ medium-chain-fatty-acid-CoA ligase (1479 aa)
       
  0.574
Bra031266
AT3G21240 (E=7e-274) 4CL2, AT4CL2 | 4CL2 (4-COUMARATE-COA LIGASE 2); 4-coumarate-CoA ligase (552 aa)
       
  0.574
Bra031265
AT3G21240 (E=8e-206) 4CL2, AT4CL2 | 4CL2 (4-COUMARATE-COA LIGASE 2); 4-coumarate-CoA ligase (559 aa)
       
  0.574
Bra031263
AT3G21230 (E=6e-244) 4CL5 | 4CL5 (4-coumarate-CoA ligase 5); 4-coumarate-CoA ligase (553 aa)
       
  0.574
Bra031262
AT3G21210 (E=1e-127) | protein binding / zinc ion binding (609 aa)
       
  0.574
Bra030429
AT1G51680 (E=7e-274) 4CL1, 4CL.1, AT4CL1 | 4CL1 (4-COUMARATE-COA LIGASE 1); 4-coumarate-CoA ligase (552 aa)
       
  0.574
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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