STRINGSTRING
Bra004274 protein (Brassica rapa) - STRING interaction network
"Bra004274" - AT1G68000 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra004274AT1G68000 (E=3e-108) ATPIS1, ATPIS | ATPIS1 (PHOSPHATIDYLINOSITOL SYNTHASE 1); CDP-diacylglycerol-inositol 3-phosphatidyltransferase (229 aa)    
Predicted Functional Partners:
Bra027046
AT1G62430 (E=9e-228) ATCDS1 | ATCDS1; phosphatidate cytidylyltransferase (421 aa)
   
 
  0.948
Bra013612
AT4G22340 (E=1e-171) | phosphatidate cytidylyltransferase, putative / CDP-diglyceride synthetase, putative (393 aa)
   
 
  0.948
Bra029697
AT5G58690 (E=9e-168) ATPLC5, PLC5 | phosphoinositide-specific phospholipase C family protein (564 aa)
         
  0.943
Bra026404
AT4G26770 (E=1e-156) | phosphatidate cytidylyltransferase/ transferase, transferring phosphorus-containing groups (421 aa)
   
 
  0.939
Bra023165
AT1G31190 (E=3e-175) IMPL1 | IMPL1 (MYO-INOSITOL MONOPHOSPHATASE LIKE 1); 3’(2’),5’-bisphosphate nucleotidase/ inositol or phosphatidylinositol phosphatase/ inositol-1(or 4)-monophosphatase (370 aa)
       
  0.935
Bra040607
AT3G02870 (E=3e-137) VTC4 | VTC4; 3’(2’),5’-bisphosphate nucleotidase/ L-galactose-1-phosphate phosphatase/ inositol or phosphatidylinositol phosphatase/ inositol-1(or 4)-monophosphatase (592 aa)
       
  0.935
Bra010703
AT4G39120 (E=6e-161) IMPL2 | IMPL2 (MYO-INOSITOL MONOPHOSPHATASE LIKE 2); 3’(2’),5’-bisphosphate nucleotidase/ L-galactose-1-phosphate phosphatase/ inositol or phosphatidylinositol phosphatase/ inositol-1(or 4)-monophosphatase (341 aa)
       
  0.935
Bra028046
AT1G34260 (E=0.0) | phosphatidylinositol-4-phosphate 5-kinase family protein (1442 aa)
       
  0.933
Bra021545
AT3G14270 (E=0.0) | phosphatidylinositol-4-phosphate 5-kinase family protein (1774 aa)
       
  0.933
Bra016167
AT1G71010 (E=0.0) | phosphatidylinositol-4-phosphate 5-kinase family protein (1541 aa)
       
  0.933
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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