STRINGSTRING
Bra004281 protein (Brassica rapa) - STRING interaction network
"Bra004281" - AT1G68100 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra004281AT1G68100 (E=1e-114) IAR1 | IAR1 (IAA-ALANINE RESISTANT 1); metal ion transmembrane transporter (426 aa)    
Predicted Functional Partners:
Bra034779
AT3G12100 (E=1e-198) | cation efflux family protein / metal tolerance protein, putative (390 aa)
   
 
  0.746
Bra025618
AT2G04620 (E=3e-223) | cation efflux family protein (765 aa)
   
 
  0.746
Bra038417
AT1G31260 (E=5e-081) ZIP10 | ZIP10 (ZINC TRANSPORTER 10 PRECURSOR); cation transmembrane transporter/ metal ion transmembrane transporter (215 aa)
       
 
  0.661
Bra038416
AT1G31260 (E=3e-068) ZIP10 | ZIP10 (ZINC TRANSPORTER 10 PRECURSOR); cation transmembrane transporter/ metal ion transmembrane transporter (154 aa)
       
 
  0.661
Bra036826
AT5G62160 (E=4e-031) AtZIP12 | AtZIP12 (ZINC TRANSPORTER 12 PRECURSOR); cation transmembrane transporter/ metal ion transmembrane transporter (290 aa)
       
 
  0.661
Bra034735
AT3G12750 (E=9e-114) ZIP1 | ZIP1 (ZINC TRANSPORTER 1 PRECURSOR); zinc ion transmembrane transporter (342 aa)
       
 
  0.661
Bra031738
AT1G60960 (E=1e-103) IRT3 | IRT3; cation transmembrane transporter/ metal ion transmembrane transporter (304 aa)
       
 
  0.661
Bra031470
AT1G60960 (E=5e-148) IRT3 | IRT3; cation transmembrane transporter/ metal ion transmembrane transporter (405 aa)
       
 
  0.661
Bra030826
AT1G55910 (E=1e-146) ZIP11 | ZIP11 (ZINC TRANSPORTER 11 PRECURSOR); cation transmembrane transporter/ metal ion transmembrane transporter (324 aa)
       
 
  0.661
Bra030823
AT1G55915 (E=7e-168) | zinc ion binding (396 aa)
       
 
  0.661
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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