STRINGSTRING
Bra004292 protein (Brassica rapa) - STRING interaction network
"Bra004292" - AT5G42090 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
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Textmining
[Homology]
Score
Bra004292AT5G42090 (E=2e-212) | LOCATED IN- endomembrane system, integral to membrane; EXPRESSED IN- 24 plant structures; EXPRESSED DURING- 14 growth stages; CONTAINS InterPro DOMAIN/s- Transmembrane receptor, eukaryota (InterPro-IPR009637); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT3G09570.1); Has 303 Blast hits to 300 proteins in 77 species- Archae - 0; Bacteria - 0; Metazoa - 180; Fungi - 10; Plants - 90; Viruses - 0; Other Eukaryotes - 23 (source- NCBI BLink). (436 aa)    
Predicted Functional Partners:
Bra018988
AT1G52780 (E=0.0) | unknown protein (1055 aa)
           
  0.552
Bra005257
AT2G36630 (E=2e-187) | unknown protein (459 aa)
           
  0.552
Bra019238
AT4G24250 (E=1e-197) MLO13, ATMLO13 | MLO13 (MILDEW RESISTANCE LOCUS O 13); calmodulin binding ; May be involved in modulation of pathogen defense and leaf cell death (489 aa)
           
  0.541
Bra024038
AT4G30850 (E=5e-178) HHP2 | HHP2 (HEPTAHELICAL TRANSMEMBRANE PROTEIN2); receptor (361 aa)
           
  0.505
Bra011228
AT4G30850 (E=1e-174) HHP2 | HHP2 (HEPTAHELICAL TRANSMEMBRANE PROTEIN2); receptor (357 aa)
           
  0.505
Bra013372
AT4G19050 (E=6e-313) | ATP binding / protein binding (1152 aa)
           
  0.477
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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