STRINGSTRING
Bra004293 protein (Brassica rapa) - STRING interaction network
"Bra004293" - AT1G68260 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra004293AT1G68260 (E=3e-079) | thioesterase family protein (200 aa)    
Predicted Functional Partners:
Bra030446
AT1G51340 (E=1e-230) | MATE efflux family protein (517 aa)
     
   
  0.500
Bra014272
AT1G51340 (E=1e-212) | MATE efflux family protein (519 aa)
     
   
  0.500
Bra012627
AT4G17970 (E=1e-270) | unknown protein (535 aa)
           
  0.495
Bra031058
AT1G18980 (E=7e-101) | germin-like protein, putative (214 aa)
           
  0.451
Bra025704
AT1G18980 (E=1e-107) | germin-like protein, putative (214 aa)
           
  0.451
Bra015423
AT1G05430 (E=5e-079) | unknown protein (271 aa)
           
  0.451
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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