STRINGSTRING
Bra004309 protein (Brassica rapa) - STRING interaction network
"Bra004309" - AT1G68440 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra004309AT1G68440 (E=2e-110) | unknown protein (302 aa)    
Predicted Functional Partners:
Bra020123
AT5G20700 (E=8e-110) | senescence-associated protein-related (250 aa)
           
  0.574
Bra003779
AT1G74940 (E=3e-091) | senescence-associated protein-related (222 aa)
           
  0.483
Bra002322
AT5G20700 (E=3e-116) | senescence-associated protein-related (248 aa)
           
  0.483
Bra010519
AT4G35750 (E=1e-092) | Rho-GTPase-activating protein-related (202 aa)
           
  0.455
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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