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Bra004312 protein (Brassica rapa) - STRING interaction network
"Bra004312" - AT1G68480 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra004312AT1G68480 (E=1e-073) JAG | JAG (JAGGED); nucleic acid binding / transcription factor/ zinc ion binding (251 aa)    
Predicted Functional Partners:
Bra028824
AT5G03680 (E=2e-233) PTL | PTL (PETAL LOSS); transcription factor (590 aa)
           
  0.499
Bra024458
AT2G18740 (E=2e-043) | small nuclear ribonucleoprotein E, putative / snRNP-E, putative / Sm protein E, putative (86 aa)
           
  0.497
Bra009518
AT5G03680 (E=4e-184) PTL | PTL (PETAL LOSS); transcription factor (571 aa)
           
  0.483
Bra005777
AT5G03680 (E=3e-212) PTL | PTL (PETAL LOSS); transcription factor (573 aa)
           
  0.483
Bra040322
AT2G45190 (E=8e-107) AFO, FIL, YAB1 | AFO (ABNORMAL FLORAL ORGANS); protein binding / transcription factor/ transcription regulator (233 aa)
           
  0.476
Bra001586
AT3G15170 (E=6e-124) CUC1, anac054, ATNAC1 | CUC1 (CUP-SHAPED COTYLEDON1); transcription factor (309 aa)
           
  0.472
Bra003309
AT2G45190 (E=4e-105) AFO, FIL, YAB1 | AFO (ABNORMAL FLORAL ORGANS); protein binding / transcription factor/ transcription regulator (210 aa)
           
  0.446
Bra017852
AT4G37750 (E=4e-222) ANT, DRG, CKC, CKC1 | ANT (AINTEGUMENTA); DNA binding / transcription factor (556 aa)
     
   
  0.420
Bra011782
AT4G37750 (E=1e-237) ANT, DRG, CKC, CKC1 | ANT (AINTEGUMENTA); DNA binding / transcription factor (545 aa)
     
   
  0.420
Bra010610
AT4G37750 (E=7e-210) ANT, DRG, CKC, CKC1 | ANT (AINTEGUMENTA); DNA binding / transcription factor (553 aa)
     
   
  0.420
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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